Evidence map›Paper›PMID 38690549›Full record

ArticleComputational and structural biotechnology journal2024

Integrating predictive coding and a user-centric interface for enhanced auditing and quality in cancer registry data.

Hong-Jie Dai, Chien-Chang Chen, Tatheer Hussain Mir, Ting-Yu Wang, Chen-Kai Wang, Ya-Chen Chang, Shu-Jung Yu, Yi-Wen Shen, Cheng-Jiun Huang, Chia-Hsuan Tsai and 18 more

Abstract read
In one paragraph

Article in Computational and structural biotechnology journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Hong-Jie DaiIntelligent System Laboratory, Department of Electrical Engineering, College of Electrical Engineering and Computer Science, National Kaohsiung University of Science and Technology, Kaohsiung 80778, Taiwan.
Chien-Chang ChenElectromagnetic Sensing Control and AI Computing System Laboratory, Department of Electrical Engineering, College of Electrical Engineering and Computer Science, National Kaohsiung University of Science and Technology, Kaohsiung 80778, Taiwan.
Tatheer Hussain MirIntelligent System Laboratory, Department of Electrical Engineering, College of Electrical Engineering and Computer Science, National Kaohsiung University of Science and Technology, Kaohsiung 80778, Taiwan.
Ting-Yu WangIntelligent System Laboratory, Department of Electrical Engineering, College of Electrical Engineering and Computer Science, National Kaohsiung University of Science and Technology, Kaohsiung 80778, Taiwan.
Chen-Kai WangIntelligent System Laboratory, Department of Electrical Engineering, College of Electrical Engineering and Computer Science, National Kaohsiung University of Science and Technology, Kaohsiung 80778, Taiwan.
Ya-Chen ChangNational Institute of Cancer Research, National Health Research Institutes, Tainan 70456, Taiwan.
Shu-Jung YuCenter for Big Data Research, Kaohsiung Medical University, Kaohsiung 80708, Taiwan.
Yi-Wen ShenCancer Center, Kaohsiung Medical University Hospital, Kaohsiung 80708, Taiwan.
Cheng-Jiun HuangIntelligent System Laboratory, Department of Electrical Engineering, College of Electrical Engineering and Computer Science, National Kaohsiung University of Science and Technology, Kaohsiung 80778, Taiwan.
Chia-Hsuan TsaiSchool of Post-Baccalaureate Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung 80708, Taiwan.
Ching-Yun WangSchool of Post-Baccalaureate Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung 80708, Taiwan.
Hsiao-Jou ChenSchool of Post-Baccalaureate Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung 80708, Taiwan.
Pei-Shan WengSchool of Post-Baccalaureate Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung 80708, Taiwan.
You-Xiang LinIntelligent System Laboratory, Department of Electrical Engineering, College of Electrical Engineering and Computer Science, National Kaohsiung University of Science and Technology, Kaohsiung 80778, Taiwan.
Sheng-Wei ChenIntelligent System Laboratory, Department of Electrical Engineering, College of Electrical Engineering and Computer Science, National Kaohsiung University of Science and Technology, Kaohsiung 80778, Taiwan.
Ming-Ju TsaiDivision of Pulmonary and Critical Care Medicine, Kaohsiung Medical University Hospital, Kaohsiung Medical University, Kaohsiung 80708, Taiwan.
Shian-Fei JuangDepartment of Medical Information, Kaohsiung Medical University Hospital, Kaohsiung 80708, Taiwan.
Su-Ying WuDepartment of Medical Information, Kaohsiung Medical University Hospital, Kaohsiung 80708, Taiwan.
Wen-Tsung TsaiDepartment of Medical Information, Kaohsiung Medical University Hospital, Kaohsiung 80708, Taiwan.
Ming-Yii HuangCancer Center, Kaohsiung Medical University Hospital, Kaohsiung 80708, Taiwan.
Chih-Jen HuangCancer Center, Kaohsiung Medical University Hospital, Kaohsiung 80708, Taiwan.
Chih-Jen YangSchool of Post-Baccalaureate Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung 80708, Taiwan.
Ping-Zun LiuHealth Promotion Administration, Ministry of Health and Welfare, Taipei 10341, Taiwan.
Chiao-Wen HuangHealth Promotion Administration, Ministry of Health and Welfare, Taipei 10341, Taiwan.
Chi-Yen HuangHealth Promotion Administration, Ministry of Health and Welfare, Taipei 10341, Taiwan.
William Yu Chung WangWaikato Management School, University of Waikato, Hamilton, New Zealand.
Inn-Wen ChongDivision of Chest Medicine, Kaohsiung Medical University Hospital, Kaohsiung Medical University, Kaohsiung 80708, Taiwan.
Yi-Hsin YangNational Institute of Cancer Research, National Health Research Institutes, Tainan 70456, Taiwan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Data curation for a hospital-based cancer registry heavily relies on the labor-intensive manual abstraction process by cancer registrars to identify cancer-related information from free-text electronic health records. To streamline this process, a natural language processing system incorporating a hybrid of deep learning-based and rule-based approaches for identifying lung cancer registry-related concepts, along with a symbolic expert system that generates registry coding based on weighted rules, was developed. The system is integrated with the hospital information system at a medical center to provide cancer registrars with a patient journey visualization platform. The embedded system offers a comprehensive view of patient reports annotated with significant registry concepts to facilitate the manual coding process and elevate overall quality. Extensive evaluations, including comparisons with state-of-the-art methods, were conducted using a lung cancer dataset comprising 1428 patients from the medical center. The experimental results illustrate the effectiveness of the developed system, consistently achieving F1-scores of 0.85 and 1.00 across 30 coding items. Registrar feedback highlights the system's reliability as a tool for assisting and auditing the abstraction. By presenting key registry items along the timeline of a patient's reports with accurate code predictions, the system improves the quality of registrar outcomes and reduces the labor resources and time required for data abstraction. Our study highlights advancements in cancer registry coding practices, demonstrating that the proposed hybrid weighted neural-symbolic cancer registry system is reliable and efficient for assisting cancer registrars in the coding workflow and contributing to clinical outcomes.

Indexed as

Cancer registryElectronic health recordNatural language processingPatient journey

Identifiers

PMID38690549
PMCPMC11059324

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.