Evidence map›Paper›PMID 38688988›Full record

ArticleScientific reports2024

A high efficiency precision genome editing method with CRISPR in iPSCs.

Avinash Singh, G Dalton Smedley, Jamee-Grace Rose, Kristina Fredriksen, Ying Zhang, Ling Li, Shauna H Yuan

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. CRISPR and the Future of Cardiac Disease Therapy: A New Genetic Frontier.International journal of molecular sciences · 2026
    Review
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  3. Genetic associations in sepsis and ARDS.Frontiers in pharmacology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Avinash SinghDepartment of Neurology, University of Minnesota, Twin Cities, Minneapolis, MN, USA.
G Dalton SmedleyDepartment of Neurology, University of Minnesota, Twin Cities, Minneapolis, MN, USA.
Jamee-Grace RoseDepartment of Neurology, University of Minnesota, Twin Cities, Minneapolis, MN, USA.
Kristina FredriksenGraduate Program in Neuroscience, University of Minnesota, Twin Cities, Minneapolis, MN, USA.
Ying ZhangMinnesota Supercomputing Institute, University of Minnesota, Twin Cities, Minneapolis, MN, USA.
Ling LiGraduate Program in Neuroscience, University of Minnesota, Twin Cities, Minneapolis, MN, USA.
Shauna H YuanDepartment of Neurology, University of Minnesota, Twin Cities, Minneapolis, MN, USA. syuan@umn.edu.
University of Minnesota · USTwin Cities Orthopedics · US

Funding

UC Irvine Alzheimer's Disease Research Center Induced Pluripotent Stem Cell CoreP50AG016573 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI LAFERLA, FRANK M · 2000 to 2019
$37.0M
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
Development of isogenic iPSC cell lines expressing tauopathy-related PERK risk variants to study homeostatic control of protein levels during ER stressR03AG070415 · NIA · UNIVERSITY OF MINNESOTA · PI YUAN, SHAUNA H · 2021 to 2022
$310k
NIA NIH HHS P50 AG016573NIA NIH HHS R03 AG070415NIH HHS 1R03AG070415NIH HHS S10 OD026929
6 · The paper itself

Abstract

The use of genetic engineering to generate point mutations in induced pluripotent stem cells (iPSCs) is essential for studying a specific genetic effect in an isogenic background. We demonstrate that a combination of p53 inhibition and pro-survival small molecules achieves a homologous recombination rate higher than 90% using Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) in human iPSCs. Our protocol reduces the effort and time required to create isogenic lines.

Indexed as

CRISPR-Cas SystemsGene EditingInduced Pluripotent Stem CellsClustered Regularly Interspaced Short Palindromic RepeatsHomologous RecombinationHumansTumor Suppressor Protein p53Tumor Suppressor Protein p53CRISPRGene editingHigh efficiencyiPSCSingle nucleotide polymorphism

Identifiers

PMID38688988
PMCPMC11061145
OpenAlexW4396515534

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.