Evidence map›Paper›PMID 38688933›Full record

ArticleNature communications2024

Positive selection in the genomes of two Papua New Guinean populations at distinct altitude levels.

Mathilde André, Nicolas Brucato, Georgi Hudjasov, Vasili Pankratov, Danat Yermakovich, Francesco Montinaro, Rita Kreevan, Jason Kariwiga, John Muke, Anne Boland and 10 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
10.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 19 citations in OpenAlex.

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  15. Denisovan admixture facilitated environmental adaptation in Papua New Guinean populations.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 7 countries.

Mathilde AndréEstonian Biocentre, Institute of Genomics, University of Tartu, Riia 23b, 51010, Tartu, Tartumaa, Estonia.ORCID http://orcid.org/0000-0002-3279-0102
Nicolas BrucatoCentre de Recherche sur la Biodiversité et l'Environnement (CRBE), Université de Toulouse, CNRS, IRD, Toulouse INP, Université Toulouse 3 - Paul Sabatier (UT3), Toulouse, France.ORCID http://orcid.org/0000-0003-2529-3607
Georgi HudjasovCentre for Genomics, Evolution & Medicine, Institute of Genomics, University of Tartu, Riia 23b, 51010, Tartu, Tartumaa, Estonia.
Vasili PankratovCentre for Genomics, Evolution & Medicine, Institute of Genomics, University of Tartu, Riia 23b, 51010, Tartu, Tartumaa, Estonia.ORCID http://orcid.org/0000-0001-7928-4402
Danat YermakovichCentre for Genomics, Evolution & Medicine, Institute of Genomics, University of Tartu, Riia 23b, 51010, Tartu, Tartumaa, Estonia.ORCID http://orcid.org/0000-0002-0712-6939
Francesco MontinaroEstonian Biocentre, Institute of Genomics, University of Tartu, Riia 23b, 51010, Tartu, Tartumaa, Estonia.ORCID http://orcid.org/0000-0002-4506-963X
Rita KreevanCentre for Genomics, Evolution & Medicine, Institute of Genomics, University of Tartu, Riia 23b, 51010, Tartu, Tartumaa, Estonia.ORCID http://orcid.org/0009-0001-4326-9937
Jason KariwigaStrand of Anthropology, Sociology and Archaeology, School of Humanities and Social Sciences, University of Papua New Guinea, University 134, PO Box 320, National Capital District, Papua New Guinea.
John MukeSocial Research Institute Ltd, Port Moresby, Papua New Guinea.
Anne BolandUniversité Paris-Saclay, CEA, Centre National de Recherche en Génomique Humaine (CNRGH), 91057, Evry, France.ORCID http://orcid.org/0000-0001-8789-5676
Jean-François DeleuzeUniversité Paris-Saclay, CEA, Centre National de Recherche en Génomique Humaine (CNRGH), 91057, Evry, France.ORCID http://orcid.org/0000-0002-5358-4463
Vincent MeyerUniversité Paris-Saclay, CEA, Centre National de Recherche en Génomique Humaine (CNRGH), 91057, Evry, France.
Nicholas EvansARC Centre of Excellence for the Dynamics of Language, Coombs Building, Fellows Road, CHL, CAP, Australian National University, Canberra, ACT, Australia.ORCID http://orcid.org/0000-0003-0893-3713
Murray P CoxSchool of Natural Sciences, Massey University, Palmerston North, New Zealand.ORCID http://orcid.org/0000-0003-1936-0236
Matthew LeavesleyStrand of Anthropology, Sociology and Archaeology, School of Humanities and Social Sciences, University of Papua New Guinea, University 134, PO Box 320, National Capital District, Papua New Guinea.ORCID http://orcid.org/0000-0002-4612-8304
Michael DannemannCentre for Genomics, Evolution & Medicine, Institute of Genomics, University of Tartu, Riia 23b, 51010, Tartu, Tartumaa, Estonia.ORCID http://orcid.org/0000-0002-7076-8731
Tõnis OrgCentre for Genomics, Evolution & Medicine, Institute of Genomics, University of Tartu, Riia 23b, 51010, Tartu, Tartumaa, Estonia.
Mait MetspaluEstonian Biocentre, Institute of Genomics, University of Tartu, Riia 23b, 51010, Tartu, Tartumaa, Estonia.ORCID http://orcid.org/0000-0003-3099-9161
Mayukh MondalCentre for Genomics, Evolution & Medicine, Institute of Genomics, University of Tartu, Riia 23b, 51010, Tartu, Tartumaa, Estonia. mondal.mayukh@gmail.com.ORCID http://orcid.org/0000-0003-0122-0323
François-Xavier RicautCentre de Recherche sur la Biodiversité et l'Environnement (CRBE), Université de Toulouse, CNRS, IRD, Toulouse INP, Université Toulouse 3 - Paul Sabatier (UT3), Toulouse, France. francois-xavier.ricaut@univ-tlse3.fr.ORCID http://orcid.org/0000-0001-7609-7898
University of Tartu · EECommissariat à l'Énergie Atomique et aux Énergies Alternatives · FREstonian Biocentre · EECentre National de la Recherche Scientifique · FRUniversity of Papua New Guinea · PGAustralian National University · AUChristian-Albrechts-Universität zu Kiel · DEUniversity of Auckland · NZ

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-10-INBS-09Agence Nationale de la Recherche (French National Research Agency) ANR-20-CE12-0003-01EC | European Regional Development Fund (Europski Fond za Regionalni Razvoj) 2014-2020.4.01.16-0030EC | European Regional Development Fund (Europski Fond za Regionalni Razvoj) MOBEC008EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 810645Fondazione CON IL SUD (Foundation with the South) 2018-PDR-01136
6 · The paper itself

Abstract

Highlanders and lowlanders of Papua New Guinea have faced distinct environmental stress, such as hypoxia and environment-specific pathogen exposure, respectively. In this study, we explored the top genomics regions and the candidate driver SNPs for selection in these two populations using newly sequenced whole-genomes of 54 highlanders and 74 lowlanders. We identified two candidate SNPs under selection - one in highlanders, associated with red blood cell traits and another in lowlanders, which is associated with white blood cell count - both potentially influencing the heart rate of Papua New Guineans in opposite directions. We also observed four candidate driver SNPs that exhibit linkage disequilibrium with an introgressed haplotype, highlighting the need to explore the possibility of adaptive introgression within these populations. This study reveals that the signatures of positive selection in highlanders and lowlanders of Papua New Guinea align closely with the challenges they face, which are specific to their environments.

Indexed as

AltitudeHaplotypesLinkage DisequilibriumPolymorphism, Single NucleotideSelection, GeneticGenetics, PopulationGenome, HumanHumansPapua New Guinea

Identifiers

PMID38688933
PMCPMC11061283
OpenAlexW4396494968

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.