Evidence map›Paper›PMID 38687614›Full record

ArticleBioscience reports2024

Does Acinetobacter calcoaceticus glucose dehydrogenase produce self-damaging H2O2?

Victoria Lublin, Brice Kauffmann, Sylvain Engilberge, Fabien Durola, Sébastien Gounel, Sabrina Bichon, Cloée Jean, Nicolas Mano, Marie-France Giraud, Léonard Michel Gabriel Henri Chavas and 3 more

Abstract read
In one paragraph

Article in Bioscience reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Victoria LublinCentre de Recherche Paul Pascal (CRPP), University Bordeaux, CNRS, UMR 5031, Pessac, France.
Brice KauffmannInstitut Européen de Chimie et Biologie (IECB), Univ. Bordeaux, CNRS, INSERM, US1, UAR 3033, Pessac, France.
Sylvain EngilbergeUniv. Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale (IBS), 71 avenue des Martyrs, Grenoble 38044, France.
Fabien DurolaCentre de Recherche Paul Pascal (CRPP), University Bordeaux, CNRS, UMR 5031, Pessac, France.
Sébastien GounelCentre de Recherche Paul Pascal (CRPP), University Bordeaux, CNRS, UMR 5031, Pessac, France.
Sabrina BichonCentre de Recherche Paul Pascal (CRPP), University Bordeaux, CNRS, UMR 5031, Pessac, France.
Cloée JeanCentre de Recherche Paul Pascal (CRPP), University Bordeaux, CNRS, UMR 5031, Pessac, France.
Nicolas ManoCentre de Recherche Paul Pascal (CRPP), University Bordeaux, CNRS, UMR 5031, Pessac, France.
Marie-France GiraudInstitute of Chemistry and Biology of Membranes and Nano-objects (CBMN), Pessac, France.
Léonard Michel Gabriel Henri ChavasNagoya University, Nagoya, Japan.
Aurélien ThureauSynchrotron SOLEIL (CNRS - CEA), Saint-Aubin, France.
Andrew ThompsonSynchrotron SOLEIL (CNRS - CEA), Saint-Aubin, France.
Claire Stines-ChaumeilCentre de Recherche Paul Pascal (CRPP), University Bordeaux, CNRS, UMR 5031, Pessac, France.ORCID 0000-0002-1863-6117

Funding

Région Nouvelle AquitaineSynchrotron SOLEIL 20211083
6 · The paper itself

Abstract

The soluble glucose dehydrogenase (sGDH) from Acinetobacter calcoaceticus has been widely studied and is used, in biosensors, to detect the presence of glucose, taking advantage of its high turnover and insensitivity to molecular oxygen. This approach, however, presents two drawbacks: the enzyme has broad substrate specificity (leading to imprecise blood glucose measurements) and shows instability over time (inferior to other oxidizing glucose enzymes). We report the characterization of two sGDH mutants: the single mutant Y343F and the double mutant D143E/Y343F. The mutants present enzyme selectivity and specificity of 1.2 (Y343F) and 5.7 (D143E/Y343F) times higher for glucose compared with that of the wild-type. Crystallographic experiments, designed to characterize these mutants, surprisingly revealed that the prosthetic group PQQ (pyrroloquinoline quinone), essential for the enzymatic activity, is in a cleaved form for both wild-type and mutant structures. We provide evidence suggesting that the sGDH produces H2O2, the level of production depending on the mutation. In addition, spectroscopic experiments allowed us to follow the self-degradation of the prosthetic group and the disappearance of sGDH's glucose oxidation activity. These studies suggest that the enzyme is sensitive to its self-production of H2O2. We show that the premature aging of sGDH can be slowed down by adding catalase to consume the H2O2 produced, allowing the design of a more stable biosensor over time. Our research opens questions about the mechanism of H2O2 production and the physiological role of this activity by sGDH.

Indexed as

Acinetobacter calcoaceticusBacterial ProteinsGlucose 1-DehydrogenaseHydrogen PeroxideCrystallography, X-RayGlucoseMutationPQQ CofactorSubstrate SpecificityBacterial ProteinsGlucoseGlucose 1-DehydrogenaseHydrogen PeroxidePQQ Cofactorhydrogen peroxide productionprotein stabilitysoluble glucose dehydrogenase

Identifiers

PMID38687614
PMCPMC11130540

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.