Evidence map›Paper›PMID 38685607›Full record

ArticleBiology of reproduction2024

Machine learning in time-lapse imaging to differentiate embryos from young vs old mice†.

Liubin Yang, Carolina Leynes, Ashley Pawelka, Isabel Lorenzo, Andrew Chou, Brendan Lee, Jason D Heaney

Abstract read
In one paragraph

Article in Biology of reproduction, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Clocks and Dominoes: Timing Mechanisms of Embryogenesis.bioRxiv : the preprint server for biology · 2026
    Article
  3. Review
  4. Article
  5. Review
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  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Liubin YangDivision of Reproductive Endocrinology and Infertility, Department of Obstetrics and Gynecology, Baylor College of Medicine, Houston, Texas, USA.
Carolina LeynesDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Ashley PawelkaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Isabel LorenzoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Andrew ChouPain Research, Informatics, Multi-morbidities, and Education (PRIME) Center, VA Connecticut Healthcare System, West Haven, Connecticut, USA.
Brendan LeeDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Jason D HeaneyDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
UM1HG006348: Cas9 Genome Integrity Supplemental ProposalUM1HG006348 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI Jason D. Heaney, Chih-Wei Logan Hsu · 2016 to 2026
$47.5M
The Yale WRHR Career Development CenterK12HD047018 · NICHD · YALE UNIVERSITY · PI Hugh Smith Taylor · 2004 to 2026
$7.8M
Using Big-Data to Identify & Prevent Transmission of Carbapenem-Resistant Enterobacteriaceae within VHAIK2CX001981 · VA · VA CONNECTICUT HEALTHCARE SYSTEM · PI CHOU, ANDREW · 2020 to 2024
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Baylor College of Medicine Department of Obstetrics and GynecologyCareer Development AwardCSRD VA IK2 CX001981Department of Veterans Affairs, Veterans Health AdministrationEunice Kennedy Shriver National Institute of Child Health and Human Development 5K12HD047018Health Services Research and Development #CIN 13-407NCATS NIH HHS UL1 TR001863NHGRI NIH HHS UM1 HG006348NICHD NIH HHS K12 HD047018NIH HHS UM1 HG006348Office of Research and DevelopmentVA
6 · The paper itself

Abstract

Time-lapse microscopy for embryos is a non-invasive technology used to characterize early embryo development. This study employs time-lapse microscopy and machine learning to elucidate changes in embryonic growth kinetics with maternal aging. We analyzed morphokinetic parameters of embryos from young and aged C57BL6/NJ mice via continuous imaging. Our findings show that aged embryos accelerated through cleavage stages (from 5-cells) to morula compared to younger counterparts, with no significant differences observed in later stages of blastulation. Unsupervised machine learning identified two distinct clusters comprising of embryos from aged or young donors. Moreover, in supervised learning, the extreme gradient boosting algorithm successfully predicted the age-related phenotype with 0.78 accuracy, 0.81 precision, and 0.83 recall following hyperparameter tuning. These results highlight two main scientific insights: maternal aging affects embryonic development pace, and artificial intelligence can differentiate between embryos from aged and young maternal mice by a non-invasive approach. Thus, machine learning can be used to identify morphokinetics phenotypes for further studies. This study has potential for future applications in selecting human embryos for embryo transfer, without or in complement with preimplantation genetic testing.

Indexed as

Embryo, MammalianEmbryonic DevelopmentMachine LearningMice, Inbred C57BLTime-Lapse ImagingAgingAnimalsFemaleMicePregnancymachine learningmaternal agingmorphokineticspredictive modelingpreimplantation mouse embryostime-lapse microscopy

Identifiers

PMID38685607
PMCPMC11180621

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.