Evidence map›Paper›PMID 38685198›Full record

ArticleTransplantation2024

Differential Effects of HDAC6 Inhibition Versus Knockout During Hepatic Ischemia-Reperfusion Injury Highlight Importance of HDAC6 C-terminal Zinc-finger Ubiquitin-binding Domain.

Seth J Concors, Paul T Hernandez, Ciaran O'Brien, John DePaolo, Douglas R Murken, David D Aufhauser, Zhonglin Wang, Yan Xiong, Lauren Krumeich, Guanghui Ge and 7 more

Abstract readComparative Study
In one paragraph

Article in Transplantation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. The histone deacetylase family in health and disease.Signal transduction and targeted therapy · 2026
    Review
  2. HDAC6 Inhibition Reduces Seeded Tau and α-Synuclein Pathologies in Primary Neuron Cultures and Wild-Type Mice.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2026
    Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Seth J ConcorsDepartment of Surgery, University of Pennsylvania, Philadelphia, PA.
Paul T HernandezDepartment of Surgery, University of Pennsylvania, Philadelphia, PA.
Ciaran O'BrienDepartment of Surgery, University of Pennsylvania, Philadelphia, PA.
John DePaoloDepartment of Surgery, University of Pennsylvania, Philadelphia, PA.
Douglas R MurkenDepartment of Surgery, University of Pennsylvania, Philadelphia, PA.
David D AufhauserDepartment of Surgery, University of Wisconsin, Madison, WI.
Zhonglin WangDepartment of Surgery, University of Pennsylvania, Philadelphia, PA.
Yan XiongDivision of Transplant Immunology, Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA.
Lauren KrumeichDepartment of Surgery, University of Pennsylvania, Philadelphia, PA.
Guanghui GeDepartment of Surgery, University of Pennsylvania, Philadelphia, PA.
Ulf H BeierDivision of Nephrology and Department of Pediatrics, Children's Hospital of Pennsylvania and University of Pennsylvania, Philadelphia, PA.
Tricia R BhattiDivision of Transplant Immunology, Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA.
Alan P KozikowskiStarWise Therapeutics, Chicago, IL.
Leandro A Alves AvelarInstitute of Pharmaceutical and Medicinal Chemistry, Heinrich-Heine-University, Düsseldorf, Germany.
Thomas KurzInstitute of Pharmaceutical and Medicinal Chemistry, Heinrich-Heine-University, Düsseldorf, Germany.
Wayne W HancockDivision of Transplant Immunology, Department of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA.
Matthew H LevineDepartment of Surgery, University of Pennsylvania, Philadelphia, PA.

Funding

TRANSGENIC AND CHIMERIC MOUSE COREP30DK050306 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI REBECCA G WELLS · 1997 to 2026
$32.5M
PROTAC Targeting of Tip60 in Syngeneic Cancer Models Using Cereblon Knock-in MiceR01CA253320 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI HANCOCK, WAYNE WILLIAM · 2020 to 2024
$2.0M
HDAC2 Inhibition Mitigates Renal Ischemia Reperfusion InjuryR01DK106243 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI LEVINE, MATTHEW HOWARD · 2016 to 2020
$1.8M
Histone/Protein Deacetylase Inhibitors Minimize Renal Ischemia-Reperfusion InjuryK08DK092282 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI LEVINE, MATTHEW HOWARD · 2011 to 2015
$768k
Targeting Sirtuin-1 to enhance Foxp3+ regulatory T-cell functionK08AI095353 · NIAID · CHILDREN'S HOSP OF PHILADELPHIA · PI BEIER, ULF · 2011 to 2015
$650k
NCI NIH HHS R01 CA253320NIAID NIH HHS K08 AI095353NIDDK NIH HHS K08 DK092282NIDDK NIH HHS P30 DK050306NIDDK NIH HHS R01 DK106243
6 · The paper itself

Abstract

backgroundIschemia-reperfusion injury (IRI) causes significant morbidity in liver transplantation among other medical conditions. IRI following liver transplantation contributes to poor outcomes and early graft loss. Histone/protein deacetylases (HDACs) regulate diverse cellular processes, play a role in mediating tissue responses to IRI, and may represent a novel therapeutic target in preventing IRI in liver transplantation.

methodsUsing a previously described standardized model of murine liver warm IRI, aspartate aminotransferase (AST) and alanine aminotransferase (ALT) levels were assessed at 24 and 48 h after reperfusion to determine the effect of different HDAC inhibitors.

resultsBroad HDAC inhibition with trichostatin-A (TSA) was protective against hepatocellular damage ( P  < 0.01 for AST and P  < 0.05 for ALT). Although HDAC class I inhibition with MS-275 provided statistically insignificant benefit, tubastatin-A (TubA), an HDAC6 inhibitor with additional activity against HDAC10, provided significant protection against liver IRI ( P  < 0.01 for AST and P  < 0.001 for ALT). Surprisingly genetic deletion of HDAC6 or -10 did not replicate the protective effects of HDAC6 inhibition with TubA, whereas treatment with an HDAC6 BUZ-domain inhibitor, LakZnFD, eliminated the protective effect of TubA treatment in liver ischemia ( P  < 0.01 for AST and P  < 0.01 for ALT).

conclusionsOur findings suggest TubA, a class IIb HDAC inhibitor, can mitigate hepatic IRI in a manner distinct from previously described class I HDAC inhibition and requires the HDAC6 BUZ-domain activity. Our data corroborate previous findings that HDAC targets for therapeutic intervention of IRI may be tissue-specific, and identify HDAC6 inhibition as a possible target in the treatment of liver IRI.

Indexed as

Histone Deacetylase 6Histone Deacetylase InhibitorsHydroxamic AcidsLiverLiver TransplantationMice, Inbred C57BLMice, KnockoutReperfusion InjuryAlanine TransaminaseAnimalsAspartate AminotransferasesDisease Models, AnimalHistone DeacetylasesIndolesMaleMiceAlanine TransaminaseAspartate AminotransferasesHdac6 protein, mouseHistone Deacetylase 6Histone Deacetylase InhibitorsHistone DeacetylasesHydroxamic AcidsIndolestrichostatin Atubastatin AUbiquitin

Identifiers

PMID38685198
PMCPMC13085454

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.