Evidence map›Paper›PMID 38684982›Full record

ArticleBMC plant biology2024

Comparative chloroplast genomes of Dactylicapnos species: insights into phylogenetic relationships.

Shunquan Yang, Juntong Chen, Zhimin Li, Xianhan Huang, Xu Zhang, Qun Liu, Komiljon Tojibaev, Hang Sun, Tao Deng

Abstract readComparative Study
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

9 authors.

Shunquan Yang *State Key Laboratory of Plant Diversity and Specialty Crops, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
Juntong Chen *State Key Laboratory of Plant Diversity and Specialty Crops, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
Zhimin LiSchool of Life Sciences, Yunnan Normal University, Kunming, 650500, China.
Xianhan HuangState Key Laboratory of Plant Diversity and Specialty Crops, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
Xu ZhangCAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.
Qun LiuState Key Laboratory of Plant Diversity and Specialty Crops, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
Komiljon TojibaevInstitute of Botany, Academy Sciences of Uzbekistan, Tashkent, 100125, Uzbekistan.
Hang SunState Key Laboratory of Plant Diversity and Specialty Crops, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China. sunhang@mail.kib.ac.cn.
Tao DengState Key Laboratory of Plant Diversity and Specialty Crops, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China. dengtao@mail.kib.ac.cn.

Funding

Key Projects of the Joint Fund of the National Natural Science Foundation of China U23A20149Key R&D Program of Yunnan 202103AF140005Major Program for Basic Research Project of Yunnan Province 202101BC070002, 202005AB160005National Natural Science Foundation of China 32322006 and 32300173Second Tibetan Plateau Scientific Expedition and Research (STEP) program 2019QZKK0502Strategic Biological Resources Capacity Building Project of Chinese Academy of Sciences KFJ-BRP-017-08
6 · The paper itself

Abstract

backgroundDactylicapnos is a climbing herbaceous vine, distributed from the Himalayas to southwestern China, and some of the species have important medicinal values. However, the chloroplast genomes of Dactylicapnos have never been investigated. In this study, chloroplast genomes of seven Dactylicapnos species covering all three sections and one informal group of Dactylicapnos were sequenced and assembled, and the detailed comparative analyses of the chloroplast genome structure were provided for the first time.

resultsThe results showed that the chloroplast genomes of Dactylicapnos have a typical quadripartite structure with lengths from 172,344 bp to 176,370 bp, encoding a total of 133-140 genes, containing 88-94 protein-coding genes, 8 rRNAs and 37-39 tRNAs. 31 codons were identified as relative synonymous codon usage values greater than one in the chloroplast genome of Dactylicapnos genus based on 80 protein-coding genes. The results of the phylogenetic analysis showed that seven Dactylicapnos species can be divided into three main categories. Phylogenetic analysis revealed that seven species form three major clades which should be treated as three sections.

conclusionsThis study provides the initial report of the chloroplast genomes of Dactylicapnos, their structural variation, comparative genomic and phylogenetic analysis for the first time. The results provide important genetic information for development of medical resources, species identification, infrageneric classification and diversification of Dactylicapnos.

Indexed as

Genome, ChloroplastPhylogenyEvolution, MolecularChloroplast genomeComparative analysisDactylicapnosPapaveraceaePhylogeny

Identifiers

PMID38684982
PMCPMC11059739

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