Evidence map›Paper›PMID 38684906›Full record

ArticleEMBO reports2024

NBR1-mediated selective autophagy of ARF7 modulates root branching.

Elise Ebstrup, Jeppe Ansbøl, Ana Paez-Garcia, Henry Culp, Jonathan Chevalier, Pauline Clemmens, Núria S Coll, Miguel A Moreno-Risueno, Eleazar Rodriguez

Abstract read
In one paragraph

Article in EMBO reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. AUXIN RESPONSE FACTOR thermostability.Nature communications · 2026
    Article
  3. Review
  4. Biomolecular condensation of ERC1 recruits ATG8 and NBR1 to drive autophagosome formation for plant heat tolerance.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Mechanisms of auxin action in plant growth and development.Nature reviews. Molecular cell biology · 2025
    Review
  6. Article
  7. Review
  8. Article
  9. Autophagy in plants.Autophagy reports · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Elise Ebstrup *Department of Biology, University of Copenhagen, 2200, Copenhagen N, Denmark.ORCID 0000-0002-6191-8873
Jeppe Ansbøl *Department of Biology, University of Copenhagen, 2200, Copenhagen N, Denmark.ORCID 0000-0002-7627-1160
Ana Paez-GarciaCentro de Biotecnología y Genómica de Plantas (Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria-CSIC (INIA/CSIC)). Campus de Montegancedo, Pozuelo de Alarcón, 28223, Madrid, Spain.ORCID 0000-0002-2006-8681
Henry CulpDepartment of Biology, University of Copenhagen, 2200, Copenhagen N, Denmark.ORCID 0009-0001-5054-0887
Jonathan ChevalierDepartment of Biology, University of Copenhagen, 2200, Copenhagen N, Denmark.
Pauline ClemmensDepartment of Biology, University of Copenhagen, 2200, Copenhagen N, Denmark.ORCID 0000-0001-6142-4577
Núria S CollCentre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Bellaterra, 08193, Spain.ORCID 0000-0002-8889-0399
Miguel A Moreno-RisuenoCentro de Biotecnología y Genómica de Plantas (Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria-CSIC (INIA/CSIC)). Campus de Montegancedo, Pozuelo de Alarcón, 28223, Madrid, Spain.ORCID 0000-0002-9794-1450
Eleazar RodriguezDepartment of Biology, University of Copenhagen, 2200, Copenhagen N, Denmark. Eleazar.rodriguez@bio.ku.dk.ORCID 0000-0002-3641-4980

Funding

EC | ERDF | European Observation Network for Territorial Development and Cohesion (ESPON) PID2022-140719NB-I00KU | Novo Nordisk Foundation Center for Protein Research, University of Copenhagen (CPR) NNF19SA0059305Ministerio de Ciencia e Innovación (MCIN) PID2019-111523GB-I00Ministry of Science, Innovation and Higher Education | Danish Agency for Science and Higher Education (Danish Agency for Science, Technology and Innovation) 1032-00249B
6 · The paper itself

Abstract

Auxin dictates root architecture via the Auxin Response Factor (ARF) family of transcription factors, which control lateral root (LR) formation. In Arabidopsis, ARF7 regulates the specification of prebranch sites (PBS) generating LRs through gene expression oscillations and plays a pivotal role during LR initiation. Despite the importance of ARF7 in this process, there is a surprising lack of knowledge about how ARF7 turnover is regulated and how this impacts root architecture. Here, we show that ARF7 accumulates in autophagy mutants and is degraded through NBR1-dependent selective autophagy. We demonstrate that the previously reported rhythmic changes to ARF7 abundance in roots are modulated via autophagy and might occur in other tissues. In addition, we show that the level of co-localization between ARF7 and autophagy markers oscillates and can be modulated by auxin to trigger ARF7 turnover. Furthermore, we observe that autophagy impairment prevents ARF7 oscillation and reduces both PBS establishment and LR formation. In conclusion, we report a novel role for autophagy during development, namely by enacting auxin-induced selective degradation of ARF7 to optimize periodic root branching.

Indexed as

ArabidopsisArabidopsis ProteinsAutophagyGene Expression Regulation, PlantIndoleacetic AcidsPlant RootsCarrier ProteinsTranscription FactorsArabidopsis ProteinsARF7 protein, ArabidopsisCarrier ProteinsIndoleacetic AcidsNBR1 protein, ArabidopsisTranscription FactorsARF7AutophagyAuxinLateral RootNBR1

Identifiers

PMID38684906
PMCPMC11169494

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.