Evidence map›Paper›PMID 38684849›Full record

ArticleEye (London, England)2024

Targeted next-generation sequencing analysis in Italian patients with keratoconus.

Marco Lombardo, Umberto Camellin, Raffaella Gioia, Sebastiano Serrao, Vincenzo Scorcia, Anna Maria Roszkowska, Giuseppe Lombardo, Matteo Bertelli, Maria Chiara Medori, Danilo Alunni Fegatelli and 3 more

Abstract read
In one paragraph

Article in Eye (London, England), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Marco LombardoStudio Italiano di Oftalmologia, Via Livenza 3, 00198, Rome, Italy. mlombardo@visioeng.it.ORCID http://orcid.org/0000-0001-8842-7102
Umberto CamellinDepartment of Biomedical Sciences, Ophthalmology Clinic, University of Messina, Via Consolare Valeria 1, 98124, Messina, Italy.
Raffaella GioiaDepartment of Ophthalmology, University Magna Graecia of Catanzaro, Viale Europa, 88100, Catanzaro, Italy.
Sebastiano SerraoStudio Italiano di Oftalmologia, Via Livenza 3, 00198, Rome, Italy.
Vincenzo ScorciaDepartment of Ophthalmology, University Magna Graecia of Catanzaro, Viale Europa, 88100, Catanzaro, Italy.
Anna Maria RoszkowskaDepartment of Biomedical Sciences, Ophthalmology Clinic, University of Messina, Via Consolare Valeria 1, 98124, Messina, Italy.
Giuseppe LombardoVision Engineering Italy srl, Via Livenza 3, 00198, Rome, Italy.ORCID http://orcid.org/0000-0002-9416-967X
Matteo BertelliMAGI's Lab srl, Via Maioliche 57, 38068, Rovereto, Italy.
Maria Chiara MedoriMAGI's Lab srl, Via Maioliche 57, 38068, Rovereto, Italy.
Danilo Alunni FegatelliDepartment of Public Health and infectious diseases, University of Rome "La Sapienza", Piazzale Aldo Moro 5, 00185, Rome, Italy.
Annarita VestriDepartment of Public Health and infectious diseases, University of Rome "La Sapienza", Piazzale Aldo Moro 5, 00185, Rome, Italy.
Rita MencucciOphthalmology Clinic, AOU Careggi, University of Florence, Largo Brambilla 3, 50134, Firenze, Italy.
Domenico Schiano LomorielloFondazione G.B. Bietti IRCCS, Via S. Stefano Rotondo 6, 00184, Rome, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveTo report variants in 26 candidate genes and describe the clinical features of Italian patients with keratoconus (KC). SUBJECTS/

methodsSixty-four patients with a confirmed diagnosis of KC were enrolled in this genetic association study. Patients were classified into two study groups according to whether they had a confirmed diagnosis of progressive or stable KC. A purpose-developed Next Generation Sequencing (NGS) panel was used to identify and analyse the coding exons and flanking exon/intron boundaries of 26 genes known to be associated with KC and corneal dystrophies. Interpretation of the pathogenic significance of variants was performed using in silico predictive algorithms.

resultThe targeted NGS research identified a total of 167 allelic variants of 22 genes in the study population; twenty-four patients had stable keratoconus (n. 54 variants) and forty patients had progressive disease (n. 113 variants). We identified genetic variants of certain pathogenic significance in five patients with progressive KC; in addition, eight novel genetic variants were found in eight patients with progressive KC. Mutations of FLG, LOXHD1, ZNF469, and DOCK9 genes were twice more frequently identified in patients with progressive than stable disease. Filaggrin gene variants were found in 49 patients (76% of total), of whom 32 patients (80% of progressive KC group) had progressive disease.

conclusionsTargeted NGS research provided new insights into the causative effect of candidate genes in the clinical phenotype of keratoconus. Filaggrin mutations were found to represent a genetic risk factor for development of progressive disease in Italy.

Indexed as

Filaggrin ProteinsHigh-Throughput Nucleotide SequencingKeratoconusMutationAdolescentAdultFemaleGenetic Association StudiesGTPase-Activating ProteinsGuanine Nucleotide Exchange FactorsHumansIntermediate Filament ProteinsItalyMaleMiddle AgedTranscription FactorsFilaggrin ProteinsFLG protein, humanGTPase-Activating ProteinsGuanine Nucleotide Exchange FactorsIntermediate Filament ProteinsTranscription FactorsZNF469 protein, human

Identifiers

PMID38684849
PMCPMC11383948

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.