Evidence map›Paper›PMID 38684714›Full record

ArticleNature communications2024

Engineering is evolution: a perspective on design processes to engineer biology.

Simeon D Castle, Michiel Stock, Thomas E Gorochowski

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Biological Systems as Physical Data Processors: Evolution as a Case of Embodied Computing.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. The design and engineering of synthetic genomes.Nature reviews. Genetics · 2025
    Review
  9. Article
  10. Bioengineering hybrid artificial life.Frontiers in bioinformatics · 2025
    Review
  11. Review
  12. Data hazards in synthetic biology.Synthetic biology (Oxford, England) · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Simeon D CastleSchool of Biological Sciences, University of Bristol, Life Sciences Building, 24 Tyndall Avenue, Bristol, UK. s.castle@bristol.ac.uk.ORCID http://orcid.org/0000-0001-6409-6142
Michiel StockKERMIT, Department of Data Analysis and Mathematical Modelling, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0003-0903-6061
Thomas E GorochowskiSchool of Biological Sciences, University of Bristol, Life Sciences Building, 24 Tyndall Avenue, Bristol, UK. thomas.gorochowski@bristol.ac.uk.ORCID http://orcid.org/0000-0003-1702-786X

Funding

Fonds Wetenschappelijk Onderzoek (Research Foundation Flanders) V408123NRCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/W013959/1RCUK | Engineering and Physical Sciences Research Council (EPSRC) EP/L016494/1Royal Society URF/R/221008
6 · The paper itself

Abstract

Careful consideration of how we approach design is crucial to all areas of biotechnology. However, choosing or developing an effective design methodology is not always easy as biology, unlike most areas of engineering, is able to adapt and evolve. Here, we put forward that design and evolution follow a similar cyclic process and therefore all design methods, including traditional design, directed evolution, and even random trial and error, exist within an evolutionary design spectrum. This contrasts with conventional views that often place these methods at odds and provides a valuable framework for unifying engineering approaches for challenging biological design problems.

Indexed as

Directed Molecular EvolutionBioengineeringBiological EvolutionBiotechnologySynthetic Biology

Identifiers

PMID38684714
PMCPMC11059173

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.