Evidence map›Paper›PMID 38684658›Full record

ArticleNature communications2024

Sulfur oxidation and reduction are coupled to nitrogen fixation in the roots of the salt marsh foundation plant Spartina alterniflora.

J L Rolando, M Kolton, T Song, Y Liu, P Pinamang, R Conrad, J T Morris, K T Konstantinidis, J E Kostka

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
18.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 41 citations in OpenAlex.

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  15. Assessing environmental gradients in relation to dark COApplied and environmental microbiology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

J L RolandoGeorgia Institute of Technology, School of Biological Sciences, Atlanta, GA, 30332, USA.
M KoltonGeorgia Institute of Technology, School of Biological Sciences, Atlanta, GA, 30332, USA.ORCID http://orcid.org/0000-0002-8166-3572
T SongGeorgia Institute of Technology, School of Biological Sciences, Atlanta, GA, 30332, USA.ORCID http://orcid.org/0000-0002-8206-0247
Y LiuGeorgia Institute of Technology, School of Biological Sciences, Atlanta, GA, 30332, USA.
P PinamangGeorgia Institute of Technology, School of Biological Sciences, Atlanta, GA, 30332, USA.
R ConradGeorgia Institute of Technology, School of Biological Sciences, Atlanta, GA, 30332, USA.
J T MorrisBelle Baruch Institute for Marine & Coastal Sciences, University of South Carolina, Columbia, SC, 29201, USA.
K T KonstantinidisGeorgia Institute of Technology, School of Biological Sciences, Atlanta, GA, 30332, USA.ORCID http://orcid.org/0000-0002-0954-4755
J E KostkaGeorgia Institute of Technology, School of Biological Sciences, Atlanta, GA, 30332, USA. joel.kostka@biology.gatech.edu.ORCID http://orcid.org/0000-0003-3051-1330
Georgia Institute of Technology · USBen-Gurion University of the Negev · ILUniversity of South Carolina · US

Funding

National Science Foundation (NSF) DEB 1754756United States Department of Commerce | National Oceanic and Atmospheric Administration (NOAA) NA18OAR4170084
6 · The paper itself

Abstract

Heterotrophic activity, primarily driven by sulfate-reducing prokaryotes, has traditionally been linked to nitrogen fixation in the root zone of coastal marine plants, leaving the role of chemolithoautotrophy in this process unexplored. Here, we show that sulfur oxidation coupled to nitrogen fixation is a previously overlooked process providing nitrogen to coastal marine macrophytes. In this study, we recovered 239 metagenome-assembled genomes from a salt marsh dominated by the foundation plant Spartina alterniflora, including diazotrophic sulfate-reducing and sulfur-oxidizing bacteria. Abundant sulfur-oxidizing bacteria encode and highly express genes for carbon fixation (RuBisCO), nitrogen fixation (nifHDK) and sulfur oxidation (oxidative-dsrAB), especially in roots stressed by sulfidic and reduced sediment conditions. Stressed roots exhibited the highest rates of nitrogen fixation and expression level of sulfur oxidation and sulfate reduction genes. Close relatives of marine symbionts from the Candidatus Thiodiazotropha genus contributed ~30% and ~20% of all sulfur-oxidizing dsrA and nitrogen-fixing nifK transcripts in stressed roots, respectively. Based on these findings, we propose that the symbiosis between S. alterniflora and sulfur-oxidizing bacteria is key to ecosystem functioning of coastal salt marshes.

Indexed as

Nitrogen FixationOxidation-ReductionPlant RootsPoaceaeSulfurWetlandsBacteriaMetagenomeNitrogenPhylogenySulfatesSymbiosisNitrogenSulfatesSulfur

Identifiers

PMID38684658
PMCPMC11059160
OpenAlexW4396221801

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.