Evidence map›Paper›PMID 38684578›Full record

ArticleJournal of cancer research and clinical oncology2024

Two-headed UNetEfficientNets for parallel execution of segmentation and classification of brain tumors: incorporating postprocessing techniques with connected component labelling.

Hari Mohan Rai, Joon Yoo, Serhii Dashkevych

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Article in Journal of cancer research and clinical oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

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0cells of the map it votes in
10citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

3 authors.

Hari Mohan RaiSchool of Computing, Gachon University, 1342 Seongnam-daero, Sujeong-Gu, Seongnam-Si, 13120, Gyeonggi-Do, Republic of Korea. drhmrai@gachon.ac.kr.
Joon YooSchool of Computing, Gachon University, 1342 Seongnam-daero, Sujeong-Gu, Seongnam-Si, 13120, Gyeonggi-Do, Republic of Korea.
Serhii DashkevychDepartment of Computer Engineering, Vistula University, Stokłosy 3, 02-787, Warszawa, Poland.

Funding

National Research Foundation of Korea NRF-2021R1F1A1063640
6 · The paper itself

Abstract

purposeThe purpose of this study is to develop accurate and automated detection and segmentation methods for brain tumors, given their significant fatality rates, with aggressive malignant tumors like Glioblastoma Multiforme (GBM) having a five-year survival rate as low as 5 to 10%. This underscores the urgent need to improve diagnosis and treatment outcomes through innovative approaches in medical imaging and deep learning techniques.

methodsIn this work, we propose a novel approach utilizing the two-headed UNetEfficientNets model for simultaneous segmentation and classification of brain tumors from Magnetic Resonance Imaging (MRI) images. The model combines the strengths of EfficientNets and a modified two-headed Unet model. We utilized a publicly available dataset consisting of 3064 brain MR images classified into three tumor classes: Meningioma, Glioma, and Pituitary. To enhance the training process, we performed 12 types of data augmentation on the training dataset. We evaluated the methodology using six deep learning models, ranging from UNetEfficientNet-B0 to UNetEfficientNet-B5, optimizing the segmentation and classification heads using binary cross entropy (BCE) loss with Dice and BCE with focal loss, respectively. Post-processing techniques such as connected component labeling (CCL) and ensemble models were applied to improve segmentation outcomes.

resultsThe proposed UNetEfficientNet-B4 model achieved outstanding results, with an accuracy of 99.4% after postprocessing. Additionally, it obtained high scores for DICE (94.03%), precision (98.67%), and recall (99.00%) after post-processing. The ensemble technique further improved segmentation performance, with a global DICE score of 95.70% and Jaccard index of 91.20%.

conclusionOur study demonstrates the high efficiency and accuracy of the proposed UNetEfficientNet-B4 model in the automatic and parallel detection and segmentation of brain tumors from MRI images. This approach holds promise for improving diagnosis and treatment planning for patients with brain tumors, potentially leading to better outcomes and prognosis.

Indexed as

Brain NeoplasmsDeep LearningMagnetic Resonance ImagingGlioblastomaGliomaHumansImage Processing, Computer-AssistedBrain tumorClassificationMagnetic resonance imagingPostprocessingSegmentationUNetEfficientNet

Identifiers

PMID38684578
PMCPMC11058623

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.