Evidence map›Paper›PMID 38683764›Full record

ArticlePloS one2024

Quantifying Y chromosome loss in primary and metastatic prostate cancer by chromosome painting.

Sai Harisha Rajanala, Romina Ghale, Subhiksha Nandakumar, Kalyani Chadalavada, Gwo-Shu Mary Lee, Konrad H Stopsack, Yu Chen, Gouri J Nanjangud, Goutam Chakraborty, Philip W Kantoff

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Sai Harisha RajanalaDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.ORCID 0000-0002-2117-120X
Romina GhaleDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Subhiksha NandakumarDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Kalyani ChadalavadaMolecular Cytogenetics Core, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Gwo-Shu Mary LeeDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Masacheussets, United States of America.
Konrad H StopsackDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Yu ChenDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Gouri J NanjangudMolecular Cytogenetics Core, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Goutam ChakrabortyDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Philip W KantoffDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Memorial Sloan Kettering Cancer Center · USDana-Farber Cancer Institute · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
SPORE In Prostate CancerP50CA092629 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Yu Chen, MICHAEL J MORRIS · 2001 to 2026
$63.0M
Functional Characterization and Development of Therapeutic Paradigms for DNA Damage Repair (DDR)-deficient Lethal Prostate CancerR01CA274967 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Goutam Chakraborty, Nagavarakishore Pillarsetty · 2023 to 2026
$3.2M
NCI NIH HHS P30 CA008748NCI NIH HHS P50 CA092629NCI NIH HHS R01 CA274967
6 · The paper itself

Abstract

Somatic Y chromosome loss in hematopoietic cells is associated with higher mortality in men. However, the status of the Y chromosome in cancer tissue is not fully known due to technical limitations, such as difficulties in labelling and sequencing DNA from the Y chromosome. We have developed a system to quantify Y chromosome gain or loss in patient-derived prostate cancer organoids. Using our system, we observed Y chromosome loss in 4 of the 13 (31%) patient-derived metastatic castration-resistant prostate cancer (mCRPC) organoids; interestingly, loss of Yq (long arm of the Y chromosome) was seen in 38% of patient-derived organoids. Additionally, potential associations were observed between mCRPC and Y chromosome nullisomy. The prevalence of Y chromosome loss was similar in primary and metastatic tissue, suggesting that Y chromosome loss is an early event in prostate cancer evolution and may not a result of drug resistance or organoid derivation. This study reports quantification of Y chromosome loss and gain in primary and metastatic prostate cancer tissue and lays the groundwork for further studies investigating the clinical relevance of Y chromosome loss or gain in mCRPC.

Indexed as

Chromosome PaintingChromosomes, Human, YNeoplasm MetastasisChromosome DeletionHumansMaleOrganoidsProstatic NeoplasmsProstatic Neoplasms, Castration-Resistant

Identifiers

PMID38683764
PMCPMC11057730
OpenAlexW4396242071

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.