Evidence map›Paper›PMID 38683298›Full record

ArticleJournal of natural medicines2024

Integrative informatics analysis identifies that ginsenoside Re improves renal fibrosis through regulation of autophagy.

Yingying Liu, Lingyun Mou, Zhengzi Yi, Qisheng Lin, Khadija Banu, Chengguo Wei, Xiaoxia Yu

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In one paragraph

Article in Journal of natural medicines, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yingying LiuDepartment of Nephrology, China-Japan Union Hospital of Jilin University, Changchun, China.
Lingyun MouDivision of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Zhengzi YiDivision of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Qisheng LinDivision of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Khadija BanuDivision of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Chengguo WeiDivision of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, USA. chengguo.wei@mssm.edu.ORCID http://orcid.org/0000-0002-7940-8310
Xiaoxia YuDivision of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, USA. yuxiaoxiayt@hotmail.com.

Funding

Natural Science Foundation of Jilin Province YDZJ202201ZYTS020Natural Science Foundation of Jilin Province YDZJ202201ZYTS107
6 · The paper itself

Abstract

We previously demonstrated that ginsenoside Re (G-Re) has protective effects on acute kidney injury. However, the underlying mechanism is still unclear. In this study, we conducted a meta-analysis and pathway enrichment analysis of all published transcriptome data to identify differentially expressed genes (DEGs) and pathways of G-Re treatment. We then performed in vitro studies to measure the identified autophagy and fibrosis markers in HK2 cells. In vivo studies were conducted using ureteric obstruction (UUO) and aristolochic acid nephropathy (AAN) models to evaluate the effects of G-Re on autophagy and kidney fibrosis. Our informatics analysis identified autophagy-related pathways enriched for G-Re treatment. Treatment with G-Re in HK2 cells reduced autophagy and mRNA levels of profibrosis markers with TGF-β stimulation. In addition, induction of autophagy with PP242 neutralized the anti-fibrotic effects of G-Re. In murine models with UUO and AAN, treatment with G-Re significantly improved renal function and reduced the upregulation of autophagy and profibrotic markers. A combination of informatics analysis and biological experiments confirmed that ginsenoside Re could improve renal fibrosis and kidney function through the regulation of autophagy. These findings provide important insights into the mechanisms of G-Re's protective effects in kidney injuries.

Indexed as

AutophagyFibrosisGinsenosidesKidneyAcute Kidney InjuryAnimalsCell LineDisease Models, AnimalHumansKidney DiseasesMaleMiceMice, Inbred C57BLUreteral Obstructionginsenoside ReGinsenosidesAutophagyChronic kidney diseaseGinsenoside ReKidney fibrosis

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.