Evidence map›Paper›PMID 38682481›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2024

Structural Evolution of Bacterial Polyphosphate Degradation Enzyme for Phosphorus Cycling.

Shang Dai, Binqiang Wang, Rui Ye, Dong Zhang, Zhenming Xie, Ning Yu, Chunhui Cai, Cheng Huang, Jie Zhao, Furong Zhang and 4 more

Abstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Structural Evolution of Bacterial Polyphosphate Degradation Enzyme for Phosphorus Cycling.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Shang DaiInstitute of Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, 310029, China.ORCID 0000-0002-9291-4488
Binqiang WangInstitute of Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, 310029, China.
Rui YeSchool of Physics, Institute of Quantitative Biology, Zhejiang University, Hangzhou, 310029, China.
Dong ZhangInstitute of Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, 310029, China.
Zhenming XieInstitute of Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, 310029, China.
Ning YuInstitute of Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, 310029, China.
Chunhui CaiInstitute of Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, 310029, China.
Cheng HuangInstitute of Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, 310029, China.
Jie ZhaoInstitute of Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, 310029, China.
Furong ZhangInstitute of Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, 310029, China.
Yuejin HuaInstitute of Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, 310029, China.ORCID 0000-0001-6743-0919
Ye ZhaoInstitute of Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, 310029, China.ORCID 0000-0002-5455-2586
Ruhong ZhouInstitute of Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, 310029, China.ORCID 0000-0001-8624-5591
Bing TianInstitute of Biophysics, College of Life Sciences, Zhejiang University, Hangzhou, 310029, China.ORCID 0000-0002-9533-6409

Funding

National Center of Technology Innovation for Biopharmaceuticals NCTIB2022HS02010National Independent Innovation Demonstration Zone Shanghai Zhangjiang Major Projects ZJZX2020014National Key R&D Program of China 2019YFA0905400National Key R&D Program of China 2021YFA1201200National Natural Science Foundation of China 32170028National Natural Science Foundation of China 32200020National Natural Science Foundation of China 32222001National Natural Science Foundation of China U1967217Shanghai Artificial Intelligence Lab P22KN00272Starry Night Science Fund of Zhejiang University Shanghai Institute for Advanced Study SN-ZJU-SIAS-003Zhejiang Provincial Natural Science Foundation of China LDQ23C050002
6 · The paper itself

Abstract

Living organisms ranging from bacteria to animals have developed their own ways to accumulate and store phosphate during evolution, in particular as the polyphosphate (polyP) granules in bacteria. Degradation of polyP into phosphate is involved in phosphorus cycling, and exopolyphosphatase (PPX) is the key enzyme for polyP degradation in bacteria. Thus, understanding the structure basis of PPX is crucial to reveal the polyP degradation mechanism. Here, it is found that PPX structure varies in the length of ɑ-helical interdomain linker (ɑ-linker) across various bacteria, which is negatively correlated with their enzymatic activity and thermostability - those with shorter ɑ-linkers demonstrate higher polyP degradation ability. Moreover, the artificial DrPPX mutants with shorter ɑ-linker tend to have more compact pockets for polyP binding and stronger subunit interactions, as well as higher enzymatic efficiency (k

Indexed as

Acid Anhydride HydrolasesPhosphorusPolyphosphatesBacteriaEvolution, MolecularAcid Anhydride HydrolasesexopolyphosphatasePhosphorusPolyphosphatesɑ‐linkerexopolyphosphatasepolyphosphatestructural evolution

Identifiers

PMID38682481
PMCPMC11234463

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.