Evidence map›Paper›PMID 38682256›Full record

ArticleGenes to cells : devoted to molecular & cellular mechanisms2024

Turnover of EDEM1, an ERAD-enhancing factor, is mediated by multiple degradation routes.

Riko Katsuki, Mai Kanuka, Ren Ohta, Shusei Yoshida, Taku Tamura

Abstract read
In one paragraph

Article in Genes to cells : devoted to molecular & cellular mechanisms, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Turnover of EDEM1, an ERAD-enhancing factor, is mediated by multiple degradation routes.Genes to cells : devoted to molecular & cellular mechanisms · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Riko KatsukiDepartment of Life Science, Graduated School of Engineering Science, Akita University, Akita, Japan.
Mai KanukaDepartment of Life Science, Graduated School of Engineering Science, Akita University, Akita, Japan.
Ren OhtaDepartment of Life Science, Graduated School of Engineering Science, Akita University, Akita, Japan.
Shusei YoshidaDepartment of Life Science, Faculty of Engineering Science, Akita University, Akita, Japan.ORCID https://orcid.org/0009-0009-6727-1677
Taku TamuraDepartment of Life Science, Graduated School of Engineering Science, Akita University, Akita, Japan.ORCID https://orcid.org/0000-0001-6074-9273

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Quality-based protein production and degradation in the endoplasmic reticulum (ER) are essential for eukaryotic cell survival. During protein maturation in the ER, misfolded or unassembled proteins are destined for disposal through a process known as ER-associated degradation (ERAD). EDEM1 is an ERAD-accelerating factor whose gene expression is upregulated by the accumulation of aberrant proteins in the ER, known as ER stress. Although the role of EDEM1 in ERAD has been studied in detail, the turnover of EDEM1 by intracellular degradation machinery, including the proteasome and autophagy, is not well understood. To clarify EDEM1 regulation in the protein level, degradation mechanism of EDEM1 was examined. Our results indicate that both ERAD and autophagy degrade EDEM1 alike misfolded degradation substrates, although each degradation machinery targets EDEM1 in different folded states of proteins. We also found that ERAD factors, including the SEL1L/Hrd1 complex, YOD1, XTP3B, ERdj3, VIMP, BAG6, and JB12, but not OS9, are involved in EDEM1 degradation in a mannose-trimming-dependent and -independent manner. Our results suggest that the ERAD accelerating factor, EDEM1, is turned over by the ERAD itself, similar to ERAD clients.

Indexed as

AutophagyEndoplasmic ReticulumEndoplasmic Reticulum-Associated DegradationMembrane ProteinsEndoplasmic Reticulum StressHEK293 CellsHumansProteasome Endopeptidase ComplexProtein FoldingProteinsProteolysisUbiquitin-Protein LigasesEDEM1 protein, humanMembrane ProteinsProteasome Endopeptidase ComplexProteinsSEL1L protein, humanUbiquitin-Protein LigasesautophagyEDEM1ERADER quality controlER stressproteasomeprotein degradationprotein turnoverunfolded protein response

Identifiers

PMID38682256
PMCPMC11163939

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.