Evidence map›Paper›PMID 38680731›Full record

ReviewEco-Environment & Health2024

Soil metabolomics: Deciphering underground metabolic webs in terrestrial ecosystems.

Yang Song, Shi Yao, Xiaona Li, Tao Wang, Xin Jiang, Nanthi Bolan, Charles R Warren, Trent R Northen, Scott X Chang

Abstract readReview
In one paragraph

Review in Eco-Environment & Health, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yang SongState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China.
Shi YaoState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China.
Xiaona LiSchool of Environment and Ecology, Jiangnan University, Wuxi 225127, China.
Tao WangInstitute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu 610299, China.
Xin JiangState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China.
Nanthi BolanSchool of Agriculture and Environment, The University of Western Australia, Nedland, WA-6009, Australia.
Charles R WarrenSchool of Life and Environmental Sciences, University of Sydney, Heydon-Laurence Building A08, NSW 2006, Australia.
Trent R NorthenEnvironmental Genomics and System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd, Berkeley, CA 94720, USA.
Scott X ChangDepartment of Renewable Resources, University of Alberta, Edmonton, Alberta T6G 2E3, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Soil metabolomics is an emerging approach for profiling diverse small molecule metabolites, i.e., metabolomes, in the soil. Soil metabolites, including fatty acids, amino acids, lipids, organic acids, sugars, and volatile organic compounds, often contain essential nutrients such as nitrogen, phosphorus, and sulfur and are directly linked to soil biogeochemical cycles driven by soil microorganisms. This paper presents an overview of methods for analyzing soil metabolites and the state-of-the-art of soil metabolomics in relation to soil nutrient cycling. We describe important applications of metabolomics in studying soil carbon cycling and sequestration, and the response of soil organic pools to changing environmental conditions. This includes using metabolomics to provide new insights into the close relationships between soil microbiome and metabolome, as well as responses of soil metabolome to plant and environmental stresses such as soil contamination. We also highlight the advantage of using soil metabolomics to study the biogeochemical cycles of elements and suggest that future research needs to better understand factors driving soil function and health.

Indexed as

Carbon cyclingDissolved organic matterExtraction methodMetabolomesRhizosphere ecologySoil microbiome

Identifiers

PMID38680731
PMCPMC11047296

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.