Evidence map›Paper›PMID 38678502›Full record

ArticleSmall (Weinheim an der Bergstrasse, Germany)2024

Dynamic Structures and Fast Transition Kinetics of Oxidized G-Quadruplexes.

Jiahao Ji, Arpit Sharma, Pravin Pokhrel, Deepak Karna, Shankar Pandey, Yao-Rong Zheng, Hanbin Mao

Abstract read
In one paragraph

Article in Small (Weinheim an der Bergstrasse, Germany), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Mechanozyme: An Artificial Enzyme With a Mechanophore Framework.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
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  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jiahao JiDepartment of Chemistry & Biochemistry, Kent State University, Kent, OH, 44242, USA.ORCID 0000-0002-6189-7750
Arpit SharmaDepartment of Chemistry & Biochemistry, Kent State University, Kent, OH, 44242, USA.
Pravin PokhrelDepartment of Chemistry & Biochemistry, Kent State University, Kent, OH, 44242, USA.
Deepak KarnaDepartment of Chemistry & Biochemistry, Kent State University, Kent, OH, 44242, USA.
Shankar PandeyDepartment of Chemistry & Biochemistry, Kent State University, Kent, OH, 44242, USA.
Yao-Rong ZhengDepartment of Chemistry & Biochemistry, Kent State University, Kent, OH, 44242, USA.
Hanbin MaoDepartment of Chemistry & Biochemistry, Kent State University, Kent, OH, 44242, USA.ORCID 0000-0002-6720-9429

Funding

Specific Recognition of G-quadruplexesR01CA236350 · NCI · KENT STATE UNIVERSITY · PI MAO, HANBIN · 2018 to 2022
$1.6M
Supplemental Request for Mechanical Modulation of Cell Migrations by DNA NanoassembliesR01CA252827 · NCI · KENT STATE UNIVERSITY · PI Hanbin Mao · 2023 to 2026
$1.4M
Development of Novel Metal-Based Supramolecular Therapeutics for Ovarian CancerR15CA249712 · NCI · KENT STATE UNIVERSITY · PI ZHENG, YAORONG · 2021 to 2021
$455k
National Science Foundation CHE2247709NCI NIH HHS 1R15CA249712-01A1NCI NIH HHS R01 CA236350NCI NIH HHS R01 CA252827
6 · The paper itself

Abstract

8-oxoguanines (8-oxoG) in cells form compromised G-quadruplexes (GQs), which may vary GQ mediated gene regulations. By mimicking molecularly crowded cellular environment using 40% DMSO or sucrose, here it is found that oxidized human telomeric GQs have stabilities close to the wild-type (WT) GQs. Surprisingly, while WT GQs show negative formation cooperativity between a Pt(II) binder and molecularly crowded environment, positive cooperativity is observed for oxidized GQ formation. Single-molecule mechanical unfolding reveals that 8-oxoG sequence formed more diverse and flexible structures with faster folding/unfolding transition kinetics, which facilitates the Pt(II) ligand to bind the best-fit structures with positive cooperativity. These findings offer new understanding on structures and properties of oxidized G-rich species in crowded environments. They also provide insights into the design of better ligands to target oxidized G-rich structures formed under oxidative cell stress.

Indexed as

G-QuadruplexesOxidation-ReductionHumansKineticsTelomerecooperativityflexible G‐rich structuresfolding/unfolding transition kineticsmechanical stability

Identifiers

PMID38678502
PMCPMC11357892

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.