Evidence map›Paper›PMID 38678016›Full record

ArticleNature communications2024

A MTA2-SATB2 chromatin complex restrains colonic plasticity toward small intestine by retaining HNF4A at colonic chromatin.

Wei Gu, Xiaofeng Huang, Pratik N P Singh, Sanlan Li, Ying Lan, Min Deng, Lauretta A Lacko, Jesus M Gomez-Salinero, Shahin Rafii, Michael P Verzi and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 7 citations in OpenAlex.

  1. Regional organization of nutrient absorption across the small intestine.Nature reviews. Gastroenterology & hepatology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Wei Gu *Division of Regenerative Medicine & Hartman Institute for Organ Regeneration, Department of Medicine, Weill Cornell Medicine, 1300 York Avenue, New York, NY, 10065, USA. wei.gu@beigene.com.ORCID http://orcid.org/0000-0002-5958-2653
Xiaofeng Huang *Division of Regenerative Medicine & Hartman Institute for Organ Regeneration, Department of Medicine, Weill Cornell Medicine, 1300 York Avenue, New York, NY, 10065, USA.ORCID http://orcid.org/0000-0001-8571-4667
Pratik N P SinghDepartment of Medical Oncology, Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, 450 Brookline Avenue, Boston, MA, 02215, USA.
Sanlan LiDivision of Regenerative Medicine & Hartman Institute for Organ Regeneration, Department of Medicine, Weill Cornell Medicine, 1300 York Avenue, New York, NY, 10065, USA.
Ying LanDivision of Regenerative Medicine & Hartman Institute for Organ Regeneration, Department of Medicine, Weill Cornell Medicine, 1300 York Avenue, New York, NY, 10065, USA.
Min DengDivision of Regenerative Medicine & Hartman Institute for Organ Regeneration, Department of Medicine, Weill Cornell Medicine, 1300 York Avenue, New York, NY, 10065, USA.
Lauretta A LackoDivision of Regenerative Medicine & Hartman Institute for Organ Regeneration, Department of Medicine, Weill Cornell Medicine, 1300 York Avenue, New York, NY, 10065, USA.
Jesus M Gomez-SalineroDivision of Regenerative Medicine & Hartman Institute for Organ Regeneration, Department of Medicine, Weill Cornell Medicine, 1300 York Avenue, New York, NY, 10065, USA.ORCID http://orcid.org/0000-0002-9024-2171
Shahin RafiiDivision of Regenerative Medicine & Hartman Institute for Organ Regeneration, Department of Medicine, Weill Cornell Medicine, 1300 York Avenue, New York, NY, 10065, USA.ORCID http://orcid.org/0000-0001-5605-1067
Michael P VerziDepartment of Genetics, Rutgers University, 145 Bevier Road, Piscataway, NJ, 08854, USA.ORCID http://orcid.org/0000-0003-4082-4330
Ramesh A ShivdasaniDepartment of Medical Oncology, Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, 450 Brookline Avenue, Boston, MA, 02215, USA.ORCID http://orcid.org/0000-0002-2828-1727
Qiao ZhouDivision of Regenerative Medicine & Hartman Institute for Organ Regeneration, Department of Medicine, Weill Cornell Medicine, 1300 York Avenue, New York, NY, 10065, USA. jqz4001@med.cornell.edu.ORCID http://orcid.org/0000-0002-0099-3909
Cornell University · USBrigham and Women's Hospital · USRutgers, The State University of New Jersey · US

Funding

Reprogram gastric tissue to functional insulin-secreting cellsR01DK106253 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI ZHOU, QIAO JOE · 2016 to 2020
$2.5M
Derivation of pancreatic islet-like organoids from human gastric stem cellsR01DK133332 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI RAFII, SHAHIN · 2022 to 2025
$2.3M
Generating novel sources of functional human insulin-secreting cells for T1D modelingUC4DK116280 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI ZHOU, QIAO JOE · 2017 to 2017
$2.1M
Investigating a master regulator of large intestine stem cellsR01DK125817 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI RAFII, SHAHIN · 2021 to 2024
$2.0M
NIDDK NIH HHS R01 DK106253NIDDK NIH HHS R01 DK125817NIDDK NIH HHS R01 DK133332NIDDK NIH HHS UC4 DK116280
6 · The paper itself

Abstract

Plasticity among cell lineages is a fundamental, but poorly understood, property of regenerative tissues. In the gut tube, the small intestine absorbs nutrients, whereas the colon absorbs electrolytes. In a striking display of inherent plasticity, adult colonic mucosa lacking the chromatin factor SATB2 is converted to small intestine. Using proteomics and CRISPR-Cas9 screening, we identify MTA2 as a crucial component of the molecular machinery that, together with SATB2, restrains colonic plasticity. MTA2 loss in the adult mouse colon activated lipid absorptive genes and functional lipid uptake. Mechanistically, MTA2 co-occupies DNA with HNF4A, an activating pan-intestinal transcription factor (TF), on colonic chromatin. MTA2 loss leads to HNF4A release from colonic chromatin, and accumulation on small intestinal chromatin. SATB2 similarly restrains colonic plasticity through an HNF4A-dependent mechanism. Our study provides a generalizable model of lineage plasticity in which broadly-expressed TFs are retained on tissue-specific enhancers to maintain cell identity and prevent activation of alternative lineages, and their release unleashes plasticity.

Indexed as

ChromatinColonHepatocyte Nuclear Factor 4Intestine, SmallMatrix Attachment Region Binding ProteinsAnimalsCell LineageCell PlasticityHumansIntestinal MucosaMaleMiceMice, Inbred C57BLMice, KnockoutRepressor ProteinsTranscription FactorsChromatinHepatocyte Nuclear Factor 4Hnf4a protein, mouseMatrix Attachment Region Binding ProteinsRepressor ProteinsTranscription Factors

Identifiers

PMID38678016
PMCPMC11055869
OpenAlexW4395688764

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.