Evidence map›Paper›PMID 38676717›Full record

ArticleArchives of microbiology2024

Genome and secretome insights: unravelling the lignocellulolytic potential of Myceliophthora verrucosa for enhanced hydrolysis of lignocellulosic biomass.

Gaurav Sharma, Baljit Kaur, Varinder Singh, Yashika Raheja, Marcos Di Falco, Adrian Tsang, Bhupinder Singh Chadha

Abstract read
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In one paragraph

Article in Archives of microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Gaurav SharmaDepartment of Microbiology, Guru Nanak Dev University, Amritsar, Punjab, 143005, India.
Baljit KaurDepartment of Microbiology, Guru Nanak Dev University, Amritsar, Punjab, 143005, India.
Varinder SinghDepartment of Microbiology, Guru Nanak Dev University, Amritsar, Punjab, 143005, India.
Yashika RahejaDepartment of Microbiology, Guru Nanak Dev University, Amritsar, Punjab, 143005, India.
Marcos Di FalcoCenter for Structural and Functional Genomics, Concordia University, 7141 Sherbrooke Street West, Montreal, QC, H4B 1R6, Canada.
Adrian TsangCenter for Structural and Functional Genomics, Concordia University, 7141 Sherbrooke Street West, Montreal, QC, H4B 1R6, Canada.
Bhupinder Singh ChadhaDepartment of Microbiology, Guru Nanak Dev University, Amritsar, Punjab, 143005, India. chadhabs@yahoo.com.
Guru Nanak Dev University · INConcordia University · CA

Funding

AMAAS NBAIM/AMASS/2017-20/PF/30/135
6 · The paper itself

Abstract

Lignocellulolytic enzymes from a novel Myceliophthora verrucosa (5DR) strain was found to potentiate the efficacy of benchmark cellulase during saccharification of acid/alkali treated bagasse by ~ 2.24 fold, indicating it to be an important source of auxiliary enzymes. The De-novo sequencing and analysis of M. verrucosa genome (31.7 Mb) revealed to encode for 7989 putative genes, representing a wide array of CAZymes (366) with a high proportions of auxiliary activity (AA) genes (76). The LC/MS QTOF based secretome analysis of M. verrucosa showed high abundance of glycosyl hydrolases and AA proteins with cellobiose dehydrogenase (CDH) (AA8), being the most prominent auxiliary protein. A gene coding for lytic polysaccharide monooxygenase (LPMO) was expressed in Pichia pastoris and CDH produced by M. verrucosa culture on rice straw based solidified medium were purified and characterized. The mass spectrometry of LPMO catalyzed hydrolytic products of avicel showed the release of both C1/C4 oxidized products, indicating it to be type-3. The lignocellulolytic cocktail comprising of in-house cellulase produced by Aspergillus allahabadii strain spiked with LPMO & CDH exhibited enhanced and better hydrolysis of mild alkali deacetylated (MAD) and unwashed acid pretreated rice straw slurry (UWAP), when compared to Cellic CTec3 at high substrate loading rate.

Indexed as

BiomassFungal ProteinsGenome, FungalLigninSaccharomycetalesSordarialesCarbohydrate DehydrogenasesCellulaseCelluloseHydrolysisMixed Function OxygenasesCarbohydrate Dehydrogenasescellobiose-quinone oxidoreductaseCellulaseCelluloseFungal ProteinsLigninlignocelluloseMixed Function OxygenasesCDHGenome sequencingHydrolysisLPMOMyceliophthora verrucosaSecretome

Identifiers

PMID38676717
OpenAlexW4395695159

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.