Evidence map›Paper›PMID 38674342›Full record

ArticleGenes2024

New Empirical Bayes Models to Jointly Analyze Multiple RNA-Sequencing Data in a Hypophosphatasia Disease Study.

Dawson Kinsman, Jian Hu, Zhi Zhang, Gengxin Li

Open access · goldAbstract read
In one paragraph

Article in Genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Dawson KinsmanDepartment of Mathematics and Statistics, University of Michigan-Dearborn, Dearborn, MI 48128, USA.
Jian HuManufacturing Systems Engineering, University of Michigan-Dearborn, Dearborn, MI 48128, USA.ORCID 0000-0002-1963-7912
Zhi ZhangDepartment of Natural Sciences, University of Michigan-Dearborn, Dearborn, MI 48128, USA.ORCID 0000-0001-6256-9516
Gengxin LiDepartment of Mathematics and Statistics, University of Michigan-Dearborn, Dearborn, MI 48128, USA.
University of Michigan–Dearborn · US

Funding

Thematic Research Planning, University of Michigan Dearborn U080680
6 · The paper itself

Abstract

Hypophosphatasia is a rare inherited metabolic disorder caused by the deficiency of tissue-nonspecific alkaline phosphatase. More severe and early onset cases present symptoms of muscle weakness, diminished motor coordination, and epileptic seizures. These neurological manifestations are poorly characterized. Thus, it is urgent to discover novel differentially expressed genes for investigating the genetic mechanisms underlying the neurological manifestations of hypophosphatasia. RNA-sequencing data offer a high-resolution and highly accurate transcript profile. In this study, we apply an empirical Bayes model to RNA-sequencing data acquired from the spinal cord and neocortex tissues of a mouse model, individually, to more accurately estimate the genetic effects without bias. More importantly, we further develop two integration methods, weighted gene approach and weighted

Indexed as

Alkaline PhosphataseBayes TheoremHypophosphatasiaAnimalsDisease Models, AnimalHumansMiceNeocortexSequence Analysis, RNASpinal CordAlkaline Phosphataseempirical Bayesfeature selectionhypophosphatasiaRNA-sequencing

Identifiers

PMID38674342
PMCPMC11049189
OpenAlexW4393189114

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.