Evidence map›Paper›PMID 38673916›Full record

ArticleInternational journal of molecular sciences2024

The Characterization of G-Quadruplexes in Tobacco Genome and Their Function under Abiotic Stress.

Kangkang Song, Bin Li, Haozhen Li, Rui Zhang, Xiaohua Zhang, Ruiwei Luan, Ying Liu, Long Yang

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Decoding G-Quadruplexes Sequence inPlants (Basel, Switzerland) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Kangkang SongCollege of Plant Protection and Agricultural Big-Data Research Center, Shandong Agricultural University, Tai'an 271018, China.
Bin LiCollege of Plant Protection and Agricultural Big-Data Research Center, Shandong Agricultural University, Tai'an 271018, China.ORCID 0009-0005-0567-1553
Haozhen LiCollege of Plant Protection and Agricultural Big-Data Research Center, Shandong Agricultural University, Tai'an 271018, China.
Rui ZhangState Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China.
Xiaohua ZhangCollege of Plant Protection and Agricultural Big-Data Research Center, Shandong Agricultural University, Tai'an 271018, China.
Ruiwei LuanCollege of Plant Protection and Agricultural Big-Data Research Center, Shandong Agricultural University, Tai'an 271018, China.
Ying LiuCollege of Plant Protection and Agricultural Big-Data Research Center, Shandong Agricultural University, Tai'an 271018, China.
Long YangCollege of Plant Protection and Agricultural Big-Data Research Center, Shandong Agricultural University, Tai'an 271018, China.ORCID 0000-0002-9990-8398
Shandong Agricultural University · CNState Key Laboratory of Plant Physiology and Biochemistry

Funding

the Foundation of Shandong Province Modern Agricultural Technology System SDAIT-25-01
6 · The paper itself

Abstract

Tobacco is an ideal model plant in scientific research. G-quadruplex is a guanine-rich DNA structure, which regulates transcription and translation. In this study, the prevalence and potential function of G-quadruplexes in tobacco were systematically analyzed. In tobacco genomes, there were 2,924,271,002 G-quadruplexes in the nuclear genome, 430,597 in the mitochondrial genome, and 155,943 in the chloroplast genome. The density of the G-quadruplex in the organelle genome was higher than that in the nuclear genome. G-quadruplexes were abundant in the transcription regulatory region of the genome, and a difference in G-quadruplex density in two DNA strands was also observed. The promoter of 60.4% genes contained at least one G-quadruplex. Compared with up-regulated differentially expressed genes (DEGs), the G-quadruplex density in down-regulated DEGs was generally higher under drought stress and salt stress. The G-quadruplex formed by simple sequence repeat (SSR) and its flanking sequence in the promoter region of the

Indexed as

Gene Expression Regulation, PlantGenome, PlantG-QuadruplexesNicotianaStress, PhysiologicalDroughtsPromoter Regions, GeneticSalt Stressabiotic stressfeature regionG-quadruplexsimple sequence repeat (SSR)tobacco

Identifiers

PMID38673916
PMCPMC11050182
OpenAlexW4394821671

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.