Evidence map›Paper›PMID 38673800›Full record

ArticleInternational journal of molecular sciences2024

Machine Learning Gene Signature to Metastatic ccRCC Based on ceRNA Network.

Epitácio Farias, Patrick Terrematte, Beatriz Stransky

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Epitácio FariasBioinformatics Multidisciplinary Environment (BioME), Federal University of Rio Grande do Norte (UFRN), Natal 59078-400, Brazil.ORCID 0000-0002-3865-5411
Patrick TerrematteMetropolis Digital Institute (IMD), Federal University of Rio Grande do Norte (UFRN), Natal 59078-400, Brazil.ORCID 0000-0002-0385-0030
Beatriz StranskyBioinformatics Multidisciplinary Environment (BioME), Federal University of Rio Grande do Norte (UFRN), Natal 59078-400, Brazil.ORCID 0000-0003-4506-393X
Universidade Federal do Rio Grande do Norte · BR

Funding

Coordenação de Aperfeicoamento de Pessoal de Nível Superior 88887.702717/2022-00
6 · The paper itself

Abstract

Clear-cell renal-cell carcinoma (ccRCC) is a silent-development pathology with a high rate of metastasis in patients. The activity of coding genes in metastatic progression is well known. New studies evaluate the association with non-coding genes, such as competitive endogenous RNA (ceRNA). This study aims to build a ceRNA network and a gene signature for ccRCC associated with metastatic development and analyze their biological functions. Using data from The Cancer Genome Atlas (TCGA), we constructed the ceRNA network with differentially expressed genes, assembled nine preliminary gene signatures from eight feature selection techniques, and evaluated the classification metrics to choose a final signature. After that, we performed a genomic analysis, a risk analysis, and a functional annotation analysis. We present an 11-gene signature:

Indexed as

Carcinoma, Renal CellGene Expression Regulation, NeoplasticGene Regulatory NetworksKidney NeoplasmsMachine LearningBiomarkers, TumorGene Expression ProfilingHumansMicroRNAsNeoplasm MetastasisRNA, Competitive EndogenousTranscriptomeBiomarkers, TumorMicroRNAsRNA, Competitive EndogenousceRNA networkmachine learningmetastasisrenal carcinomatranscriptional signature

Identifiers

PMID38673800
PMCPMC11049832
OpenAlexW4394721147

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.