Evidence map›Paper›PMID 38673728›Full record

ArticleInternational journal of molecular sciences2024

TANK Binding Kinase 1 Promotes BACH1 Degradation through Both Phosphorylation-Dependent and -Independent Mechanisms without Relying on Heme and FBXO22.

Liang Liu, Mitsuyo Matsumoto, Miki Watanabe-Matsui, Tadashi Nakagawa, Yuko Nagasawa, Jingyao Pang, Bert K K Callens, Akihiko Muto, Kyoko Ochiai, Hirotaka Takekawa and 6 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 4 countries.

Liang LiuDepartment of Biochemistry, Tohoku University Graduate School of Medicine, Sendai 980-8576, Japan.ORCID 0000-0002-2057-3004
Mitsuyo MatsumotoDepartment of Biochemistry, Tohoku University Graduate School of Medicine, Sendai 980-8576, Japan.ORCID 0000-0002-2918-9893
Miki Watanabe-MatsuiDepartment of Neurochemistry, Tohoku University Graduate School of Medicine, Sendai 980-8576, Japan.
Tadashi NakagawaDivision of Cell Proliferation, Tohoku University Graduate School of Medicine, Sendai 980-8576, Japan.
Yuko NagasawaDivision of Cell Proliferation, Tohoku University Graduate School of Medicine, Sendai 980-8576, Japan.
Jingyao PangDepartment of Biochemistry, Tohoku University Graduate School of Medicine, Sendai 980-8576, Japan.
Bert K K CallensDepartment of Biochemistry, Tohoku University Graduate School of Medicine, Sendai 980-8576, Japan.ORCID 0000-0002-9217-1768
Akihiko MutoDepartment of Biochemistry, Tohoku University Graduate School of Medicine, Sendai 980-8576, Japan.
Kyoko OchiaiDepartment of Biochemistry, Tohoku University Graduate School of Medicine, Sendai 980-8576, Japan.
Hirotaka TakekawaDepartment of Biochemistry, Tohoku University Graduate School of Medicine, Sendai 980-8576, Japan.
Mahabub AlamDepartment of Biochemistry, Tohoku University Graduate School of Medicine, Sendai 980-8576, Japan.ORCID 0000-0001-9837-2598
Hironari NishizawaDepartment of Biochemistry, Tohoku University Graduate School of Medicine, Sendai 980-8576, Japan.ORCID 0000-0001-7024-9942
Mikako ShirouzuLaboratory for Protein Functional and Structural Biology, RIKEN Center for Biosystems Dynamics Research, Yokohama 305-0074, Japan.
Hiroki ShimaDepartment of Biochemistry, Tohoku University Graduate School of Medicine, Sendai 980-8576, Japan.ORCID 0000-0001-8681-8337
Keiko NakayamaDivision of Cell Proliferation, Tohoku University Graduate School of Medicine, Sendai 980-8576, Japan.
Kazuhiko IgarashiDepartment of Biochemistry, Tohoku University Graduate School of Medicine, Sendai 980-8576, Japan.ORCID 0000-0002-2470-2475
Tohoku University · JPRIKEN Center for Biosystems Dynamics Research · JP

Funding

Japan Society for the Promotion of Science 20KK0176Japan Society for the Promotion of Science 22H00443Japan Society for the Promotion of Science 22H02895
6 · The paper itself

Abstract

BTB and CNC homology 1 (BACH1) represses the expression of genes involved in the metabolism of iron, heme and reactive oxygen species. While BACH1 is rapidly degraded when it is bound to heme, it remains unclear how BACH1 degradation is regulated under other conditions. We found that FBXO22, a ubiquitin ligase previously reported to promote BACH1 degradation, polyubiquitinated BACH1 only in the presence of heme in a highly purified reconstitution assay. In parallel to this regulatory mechanism, TANK binding kinase 1 (TBK1), a protein kinase that activates innate immune response and regulates iron metabolism via ferritinophagy, was found to promote BACH1 degradation when overexpressed in 293T cells. While TBK1 phosphorylated BACH1 at multiple serine and threonine residues, BACH1 degradation was observed with not only the wild-type TBK1 but also catalytically impaired TBK1. The BACH1 degradation in response to catalytically impaired TBK1 was not dependent on FBXO22 but involved both autophagy-lysosome and ubiquitin-proteasome pathways judging from its suppression by using inhibitors of lysosome and proteasome. Chemical inhibition of TBK1 in hepatoma Hepa1 cells showed that TBK1 was not required for the heme-induced BACH1 degradation. Its inhibition in Namalwa B lymphoma cells increased endogenous BACH1 protein. These results suggest that TBK1 promotes BACH1 degradation in parallel to the FBXO22- and heme-dependent pathway, placing BACH1 as a downstream effector of TBK1 in iron metabolism or innate immune response.

Indexed as

Basic-Leucine Zipper Transcription FactorsF-Box ProteinsHemeProtein Serine-Threonine KinasesProteolysisReceptors, Cytoplasmic and NuclearAutophagyCell Line, TumorHEK293 CellsHumansLysosomesPhosphorylationProteasome Endopeptidase ComplexUbiquitinationBACH1 protein, humanBasic-Leucine Zipper Transcription FactorsF-Box ProteinsFBXO22 protein, humanHemeProteasome Endopeptidase ComplexProtein Serine-Threonine KinasesReceptors, Cytoplasmic and NuclearTBK1 protein, humanautophagyBACH1FBXO22hemephosphorylationTBK1ubiquitination

Identifiers

PMID38673728
PMCPMC11050367
OpenAlexW4394613357

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.