Evidence map›Paper›PMID 38672428›Full record

ArticleBiomolecules2024

Mitochondrial and Nuclear DNA Variants in Amyotrophic Lateral Sclerosis: Enrichment in the Mitochondrial Control Region and Sirtuin Pathway Genes in Spinal Cord Tissue.

Sharon Natasha Cox, Claudio Lo Giudice, Anna Lavecchia, Maria Luana Poeta, Matteo Chiara, Ernesto Picardi, Graziano Pesole

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Sharon Natasha CoxDepartment of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", 70126 Bari, Italy.ORCID 0000-0002-8488-440X
Claudio Lo GiudiceInstitute of Biomedical Technologies, National Research Council, 70126 Bari, Italy.
Anna LavecchiaDepartment of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", 70126 Bari, Italy.ORCID 0000-0002-1363-9351
Maria Luana PoetaDepartment of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", 70126 Bari, Italy.
Matteo ChiaraDepartment of Biosciences, University of Milan, 20133 Milan, Italy.ORCID 0000-0003-3983-4961
Ernesto PicardiDepartment of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", 70126 Bari, Italy.ORCID 0000-0002-6549-0114
Graziano PesoleDepartment of Biosciences, Biotechnology and Environment, University of Bari "Aldo Moro", 70126 Bari, Italy.ORCID 0000-0003-3663-0859
University of Bari Aldo Moro · ITInstitute of Biomembranes, Bioenergetics and Molecular Biotechnologies · ITInstitute of Biomedical Technologies · ITUniversity of Milan · IT

Funding

ELIXIR-IT ELIXIRNextGenIT IR0000010National Research Centers-Extended Partnerships: MNESYS PE_0000006National Research Centers: "Gene Therapy and Drugs based on RNA Technology" CN_00000041National Research Centers: "High Performance Computing, Big Data and Quantum Computing" CN_00000013Research for Innovation (REFIN)-POR PUGLIA FESR-FSE 2014/2020 UNIBA148- project code C1A93B75-CUP H94I20000410008
6 · The paper itself

Abstract

Amyotrophic Lateral Sclerosis (ALS) is a progressive disease with prevalent mitochondrial dysfunctions affecting both upper and lower motor neurons in the motor cortex, brainstem, and spinal cord. Despite mitochondria having their own genome (mtDNA), in humans, most mitochondrial genes are encoded by the nuclear genome (nDNA). Our study aimed to simultaneously screen for nDNA and mtDNA genomes to assess for specific variant enrichment in ALS compared to control tissues. Here, we analysed whole exome (WES) and whole genome (WGS) sequencing data from spinal cord tissues, respectively, of 6 and 12 human donors. A total of 31,257 and 301,241 variants in nuclear-encoded mitochondrial genes were identified from WES and WGS, respectively, while mtDNA reads accounted for 73 and 332 variants. Despite technical differences, both datasets consistently revealed a specific enrichment of variants in the mitochondrial Control Region (CR) and in several of these genes directly associated with mitochondrial dynamics or with Sirtuin pathway genes within ALS tissues. Overall, our data support the hypothesis of a variant burden in specific genes, highlighting potential actionable targets for therapeutic interventions in ALS.

Indexed as

Amyotrophic Lateral SclerosisDNA, MitochondrialSirtuinsSpinal CordAgedCell NucleusExome SequencingFemaleHumansMaleMiddle AgedMitochondriaDNA, MitochondrialSirtuinsAmyotrophic Lateral Sclerosisbioinformatic pipelineheteroplasmymtDNAnDNAvariantsWESWGS

Identifiers

PMID38672428
PMCPMC11048214
OpenAlexW4393279862

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.