Evidence map›Paper›PMID 38672394›Full record

ArticleAnimals : an open access journal from MDPI2024

Genomic Inbreeding and Runs of Homozygosity Analysis of Cashmere Goat.

Qian Zhao, Chang Huang, Qian Chen, Yingxiao Su, Yanjun Zhang, Ruijun Wang, Rui Su, Huijuan Xu, Shucai Liu, Yuehui Ma and 2 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Animals : an open access journal from MDPI, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
11.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Qian ZhaoDepartment of Animal Breeding and Reproduction, College of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.
Chang HuangDepartment of Animal Breeding and Reproduction, College of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.ORCID 0009-0006-5961-5909
Qian ChenState Key Laboratory of Animal Biotech Breeding, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100193, China.
Yingxiao SuState Key Laboratory of Animal Biotech Breeding, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100193, China.
Yanjun ZhangCollege of Animal Science, Inner Mongolia Agricultural University, Hohhot 010018, China.
Ruijun WangCollege of Animal Science, Inner Mongolia Agricultural University, Hohhot 010018, China.
Rui SuCollege of Animal Science, Inner Mongolia Agricultural University, Hohhot 010018, China.ORCID 0000-0001-8386-7408
Huijuan XuChifeng Hanshan White Cashmere Goat Breeding Farm, Chifeng 024506, China.
Shucai LiuChifeng Hanshan White Cashmere Goat Breeding Farm, Chifeng 024506, China.
Yuehui MaState Key Laboratory of Animal Biotech Breeding, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100193, China.ORCID 0000-0001-9526-1454
Qianjun ZhaoState Key Laboratory of Animal Biotech Breeding, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100193, China.
Shaohui YeDepartment of Animal Breeding and Reproduction, College of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.
Yunnan Agricultural University · CNInner Mongolia Agricultural University · CNChinese Academy of Agricultural Sciences · CN

Funding

the Major Science and Technology Program of Inner Mongolia Autonomous Region 2021ZD0012the Ministry of Agriculture and Rural of the People's Republic of China 19221953the Modern Agro-industry Technology Research System CARS-39-01the National Key Research and Development Program of China 2022YFD1300203the National Key Research and Development Program of China SQ2022YFD1300062-01
6 · The paper itself

Abstract

Cashmere goats are valuable genetic resources which are famous worldwide for their high-quality fiber. Runs of homozygosity (ROHs) have been identified as an efficient tool to assess inbreeding level and identify related genes under selection. However, there is limited research on ROHs in cashmere goats. Therefore, we investigated the ROH pattern, assessed genomic inbreeding levels and examined the candidate genes associated with the cashmere trait using whole-genome resequencing data from 123 goats. Herein, the Inner Mongolia cashmere goat presented the lowest inbreeding coefficient of 0.0263. In total, we identified 57,224 ROHs. Seventy-four ROH islands containing 50 genes were detected. Certain identified genes were related to meat, fiber and milk production (

Indexed as

cashmere goatgenetic diversityinbreeding coefficientruns of homozygosityselection signatures

Identifiers

PMID38672394
PMCPMC11047310
OpenAlexW4394998161

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.