Evidence map›Paper›PMID 38668312›Full record

ArticleMetabolites2024

Selected Ion Monitoring for Orbitrap-Based Metabolomics.

Wenyun Lu, Matthew J McBride, Won Dong Lee, Xi Xing, Xincheng Xu, Xi Li, Anna M Oschmann, Yihui Shen, Caroline Bartman, Joshua D Rabinowitz

Open access · goldAbstract read
In one paragraph

Article in Metabolites, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Oxidative pentose phosphate pathway is required for T cell activation and antitumor immunity.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Wenyun LuLewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.ORCID 0000-0003-1787-2617
Matthew J McBrideLewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.ORCID 0000-0001-9846-3385
Won Dong LeeLewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.ORCID 0000-0002-2344-171X
Xi XingLewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Xincheng XuLewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Xi LiLewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Anna M OschmannLewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Yihui ShenLewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Caroline BartmanLewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Joshua D RabinowitzLewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Princeton University · USRutgers, The State University of New Jersey · US

Funding

TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Tracie Saunders · 1997 to 2026
$94.5M
VIRAL VECTOR COREP30DK019525 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Patrick Seale · 1986 to 2026
$48.3M
Revealing cancer metabolism via mass spectrometry and isotope tracersR50CA211437 · NCI · PRINCETON UNIVERSITY · PI Wenyun Lu · 2016 to 2026
$1.3M
Impact of insulin on lactate metabolismF32DK127843 · NIDDK · PRINCETON UNIVERSITY · PI LEE, WON DONG · 2021 to 2023
$208k
Modulating one-carbon metabolism with diet and targeted inhibitors to treat cancerF32CA250190 · NCI · PRINCETON UNIVERSITY · PI MCBRIDE, MATTHEW JOSEPH · 2020 to 2022
$203k
Measuring and manipulating metabolic fluxes in the tumor microenvironmentK99CA273517 · NCI · PRINCETON UNIVERSITY · PI BARTMAN, CAROLINE · 2022 to 2022
$129k
NCI NIH HHS F32 CA250190NCI NIH HHS K99 CA273517NCI NIH HHS P30 CA072720NCI NIH HHS R50 CA211437NIDDK NIH HHS F32 DK127843NIDDK NIH HHS P30 DK019525NIH HHS P30CA072720NIH HHS P30DK019525, R50CA211437, F32CA250190, K99CA273517, F32DK127843
6 · The paper itself

Abstract

Orbitrap mass spectrometry in full scan mode enables the simultaneous detection of hundreds of metabolites and their isotope-labeled forms. Yet, sensitivity remains limiting for many metabolites, including low-concentration species, poor ionizers, and low-fractional-abundance isotope-labeled forms in isotope-tracing studies. Here, we explore selected ion monitoring (SIM) as a means of sensitivity enhancement. The analytes of interest are enriched in the orbitrap analyzer by using the quadrupole as a mass filter to select particular ions. In tissue extracts, SIM significantly enhances the detection of ions of low intensity, as indicated by improved signal-to-noise (S/N) ratios and measurement precision. In addition, SIM improves the accuracy of isotope-ratio measurements. SIM, however, must be deployed with care, as excessive accumulation in the orbitrap of similar

Indexed as

fluxomicsfull scanisotope labelingisotope tracingmetabolomicsorbitraprelative standard deviationselected ion monitoringsignal-to-noise ratioSIM

Identifiers

PMID38668312
PMCPMC11051813
OpenAlexW4393142510

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.