Evidence map›Paper›PMID 38667328›Full record

ArticleCells2024

5-Hydroxymethylcytosine in Cell-Free DNA Predicts Immunotherapy Response in Lung Cancer.

Jianming Shao, Yitian Xu, Randall J Olsen, Saro Kasparian, Kai Sun, Sunil Mathur, Jun Zhang, Chuan He, Shu-Hsia Chen, Eric H Bernicker and 1 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Cells, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT07224841 (Development of a cfDNA 5mC/5hmC-based Epigenetic Biomarker Panel to Identify Determinants of Response In VEGF/EGFR-targeted Therapy for Metastatic Colorectal Cancer), which is not on this map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT07224841 recruitingnot on this map

Development of a cfDNA 5mC/5hmC-based Epigenetic Biomarker Panel to Identify Determinants of Response In VEGF/EGFR-targeted Therapy for Metastatic Colorectal Cancer

TypeobservationalSponsorCity of Hope Medical CenterRan2024 to 2028Enrolled500ConditionsCRC (Colorectal Cancer)ArmscfDNA 5mC/5hmC Sequencing (EpiDRIVE Discovery Phase), EpiDRIVE Assay (Targeted Sequencing / qPCR Validation)
3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Jianming ShaoDepartment of Pathology and Genomic Medicine, Houston Methodist Hospital, Houston, TX 77030, USA.
Yitian XuHouston Methodist Research Institute, Houston, TX 77030, USA.
Randall J OlsenDepartment of Pathology and Genomic Medicine, Houston Methodist Hospital, Houston, TX 77030, USA.
Saro KasparianNeal Cancer Center, Houston Methodist Hospital, Houston, TX 77030, USA.
Kai SunWeill Cornell Medical College, New York, NY 10065, USA.ORCID 0000-0001-5338-3920
Sunil MathurHouston Methodist Research Institute, Houston, TX 77030, USA.
Jun ZhangWeill Cornell Medical College, New York, NY 10065, USA.
Chuan HeDepartment of Chemistry, Department of Biochemistry and Molecular Biology, Institute for Biophysical Dynamics, The University of Chicago, Chicago, IL 60637, USA.
Shu-Hsia ChenHouston Methodist Research Institute, Houston, TX 77030, USA.
Eric H BernickerNeal Cancer Center, Houston Methodist Hospital, Houston, TX 77030, USA.
Zejuan LiDepartment of Pathology and Genomic Medicine, Houston Methodist Hospital, Houston, TX 77030, USA.ORCID 0000-0002-2714-8940
Houston Methodist · USHoward Hughes Medical Institute · US

Funding

American Cancer Society RSG-17-044-01-LIB
6 · The paper itself

Abstract

Immune checkpoint inhibitors (ICIs) drastically improve therapeutic outcomes for lung cancer, but accurately predicting individual patient responses to ICIs remains a challenge. We performed the genome-wide profiling of 5-hydroxymethylcytosine (5hmC) in 85 plasma cell-free DNA (cfDNA) samples from lung cancer patients and developed a 5hmC signature that was significantly associated with progression-free survival (PFS). We built a 5hmC predictive model to quantify the 5hmC level and validated the model in the validation, test, and control sets. Low weighted predictive scores (wp-scores) were significantly associated with a longer PFS compared to high wp-scores in the validation [median 7.6 versus 1.8 months;

Indexed as

5-MethylcytosineCell-Free Nucleic AcidsImmunotherapyLung NeoplasmsAgedBiomarkers, TumorFemaleHumansImmune Checkpoint InhibitorsMaleMiddle AgedTreatment Outcome5-hydroxymethylcytosine5-MethylcytosineBiomarkers, TumorCell-Free Nucleic AcidsImmune Checkpoint Inhibitors5-hydroxymethylcytosinebiomarkercell-free DNAimmune checkpoint inhibitorlung cancerpredictive

Identifiers

PMID38667328
PMCPMC11049556
OpenAlexW4394963291

What OpenQuestion holds

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LicenceCC BY
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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.