Evidence map›Paper›PMID 38665903›Full record

ArticleNature cardiovascular research2023

Single-cell T cell receptor sequencing of paired human atherosclerotic plaques and blood reveals autoimmune-like features of expanded effector T cells.

Marie A C Depuydt, Frank H Schaftenaar, Koen H M Prange, Arjan Boltjes, Esmeralda Hemme, Lucie Delfos, Jill de Mol, Maaike J M de Jong, Mireia N A Bernabé Kleijn, Judith A H M Peeters and 10 more

Open access · hybridAbstract read
In one paragraph

Article in Nature cardiovascular research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
13.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. T Cell Thoughts.Immunological reviews · 2026
    Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Review
  13. CD8Nature reviews. Cardiology · 2026
    Review
  14. Review
  15. Review
  16. Review
  17. Review
  18. Review
  19. Review
  20. ApoB-specific CD4Frontiers in immunology · 2026
    Review

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 1 country.

Marie A C Depuydt *Leiden Academic Centre for Drug Research, Division of Biotherapeutics, Leiden University, Leiden, the Netherlands.ORCID 0000-0002-7174-1952
Frank H Schaftenaar *Leiden Academic Centre for Drug Research, Division of Biotherapeutics, Leiden University, Leiden, the Netherlands.
Koen H M PrangeAmsterdam University Medical Centers, University of Amsterdam, Experimental Vascular Biology, Department of Medical Biochemistry, Amsterdam Cardiovascular Sciences, Amsterdam Infection and Immunity, Amsterdam, the Netherlands.ORCID 0000-0002-9835-1735
Arjan BoltjesCentral Diagnostic Laboratory, University Medical Center, Utrecht University, Utrecht, the Netherlands.ORCID 0000-0002-6338-051X
Esmeralda HemmeLeiden Academic Centre for Drug Research, Division of Biotherapeutics, Leiden University, Leiden, the Netherlands.ORCID 0000-0001-5853-8784
Lucie DelfosLeiden Academic Centre for Drug Research, Division of Biotherapeutics, Leiden University, Leiden, the Netherlands.
Jill de MolLeiden Academic Centre for Drug Research, Division of Biotherapeutics, Leiden University, Leiden, the Netherlands.ORCID 0000-0003-3541-9912
Maaike J M de JongLeiden Academic Centre for Drug Research, Division of Biotherapeutics, Leiden University, Leiden, the Netherlands.
Mireia N A Bernabé KleijnLeiden Academic Centre for Drug Research, Division of Biotherapeutics, Leiden University, Leiden, the Netherlands.
Judith A H M PeetersDepartment of Surgery, Haaglanden Medisch Centrum Westeinde, The Hague, the Netherlands.ORCID 0000-0002-0051-9836
Lauren GoncalvesDepartment of Surgery, Haaglanden Medisch Centrum Westeinde, The Hague, the Netherlands.
Anouk WezelDepartment of Surgery, Haaglanden Medisch Centrum Westeinde, The Hague, the Netherlands.
Harm J SmeetsDepartment of Surgery, Haaglanden Medisch Centrum Westeinde, The Hague, the Netherlands.
Gert J de BorstDepartment of Vascular Surgery, University Medical Centre Utrecht, Utrecht, the Netherlands.
Amanda C FoksLeiden Academic Centre for Drug Research, Division of Biotherapeutics, Leiden University, Leiden, the Netherlands.ORCID 0000-0002-9747-3458
Gerard PasterkampCentral Diagnostic Laboratory, University Medical Center, Utrecht University, Utrecht, the Netherlands.ORCID 0000-0001-5345-1022
Menno P J de WintherAmsterdam University Medical Centers, University of Amsterdam, Experimental Vascular Biology, Department of Medical Biochemistry, Amsterdam Cardiovascular Sciences, Amsterdam Infection and Immunity, Amsterdam, the Netherlands.ORCID 0000-0002-4038-6636
Johan KuiperLeiden Academic Centre for Drug Research, Division of Biotherapeutics, Leiden University, Leiden, the Netherlands.
Ilze BotLeiden Academic Centre for Drug Research, Division of Biotherapeutics, Leiden University, Leiden, the Netherlands.ORCID 0000-0002-1242-1959
Bram SlütterLeiden Academic Centre for Drug Research, Division of Biotherapeutics, Leiden University, Leiden, the Netherlands.ORCID 0000-0003-3996-0503
Leiden University · NLMedisch Centrum Haaglanden · NLAmsterdam University Medical Centers · NLUtrecht University · NLUniversity Medical Center Utrecht · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Atherosclerosis is a lipid-driven chronic inflammatory disease; however, whether it can be classified as an autoimmune disease remains unclear. In this study, we applied single-cell T cell receptor seqencing (scTCR-seq) on human carotid artery plaques and matched peripheral blood mononuclear cell samples to assess the extent of TCR clonality and antigen-specific activation within the various T cell subsets. We observed the highest degree of plaque-specific clonal expansion in effector CD4

Indexed as

AtherosclerosisAutoimmunity

Identifiers

PMID38665903
PMCPMC11041750
OpenAlexW4318486486

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.