Evidence map›Paper›PMID 38665535›Full record

ArticleChemical science2024

Fluorescent carbazole-derived α-amino acids: structural mimics of tryptophan.

Rebecca Clarke, Liyao Zeng, Bethany C Atkinson, Malcolm Kadodwala, Andrew R Thomson, Andrew Sutherland

Open access · diamondAbstract read
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Article in Chemical science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Rebecca ClarkeSchool of Chemistry, University of Glasgow Joseph Black Building, University Avenue Glasgow G12 8QQ UK Drew.Thomson@glasgow.ac.uk Andrew.Sutherland@glasgow.ac.uk.
Liyao ZengSchool of Chemistry, University of Glasgow Joseph Black Building, University Avenue Glasgow G12 8QQ UK Drew.Thomson@glasgow.ac.uk Andrew.Sutherland@glasgow.ac.uk.
Bethany C AtkinsonSchool of Chemistry, University of Glasgow Joseph Black Building, University Avenue Glasgow G12 8QQ UK Drew.Thomson@glasgow.ac.uk Andrew.Sutherland@glasgow.ac.uk.
Malcolm KadodwalaSchool of Chemistry, University of Glasgow Joseph Black Building, University Avenue Glasgow G12 8QQ UK Drew.Thomson@glasgow.ac.uk Andrew.Sutherland@glasgow.ac.uk.ORCID https://orcid.org/0000-0003-4989-5688
Andrew R ThomsonSchool of Chemistry, University of Glasgow Joseph Black Building, University Avenue Glasgow G12 8QQ UK Drew.Thomson@glasgow.ac.uk Andrew.Sutherland@glasgow.ac.uk.ORCID https://orcid.org/0000-0002-1066-1369
Andrew SutherlandSchool of Chemistry, University of Glasgow Joseph Black Building, University Avenue Glasgow G12 8QQ UK Drew.Thomson@glasgow.ac.uk Andrew.Sutherland@glasgow.ac.uk.ORCID https://orcid.org/0000-0001-7907-5766
University of Glasgow · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fluorescent tags are commonly used for imaging of proteins and peptides during biological events; however, the large size of dyes can disrupt protein structure and function, and typically require the use of a chemical spacer. Herein, we report the synthesis of a new class of fluorescent unnatural α-amino acid, containing carbazole side-chains designed to mimic l-tryptophan and thus, readily incorporated into peptides. The amino acids were constructed using a Negishi cross-coupling reaction as the key step and exhibited strong fluorescent emission, with high quantum yields in both organic solvents and water. Compatible with solid phase peptide synthesis, the carbazole amino acids were used to replace tryptophan in a β-hairpin model peptide and shown to be a close structural mimic with retention of conformation. They were also found to be effective fluorescent molecular reporters for biological events. Incorporation into a proline-rich ligand of the WW domain protein demonstrated that the fluorescent properties of a carbazole amino acid could be used to measure the protein-protein binding interaction of this important biological signalling process.

Identifiers

PMID38665535
PMCPMC11040653
OpenAlexW4393045568

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.