Evidence map›Paper›PMID 38664966›Full record

ArticleBiophysical journal2024

Epigenetic marks uniquely tune the material properties of HP1α condensates.

Priyasha Deshpande, Emily Prentice, Alfredo Vidal Ceballos, Patrizia Casaccia, Shana Elbaum-Garfinkle

Open access · hybridAbstract read
In one paragraph

Article in Biophysical journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Priyasha DeshpandePh.D. Program in Biochemistry, Graduate Center of the City University of New York, New York, New York; Structural Biology Initiative, Advanced Science Research Center, CUNY, New York, New York.
Emily PrenticePh.D. Program in Biology, Graduate Center of the City University of New York, New York, New York; Neuroscience Initiative, Advanced Science Research Center, CUNY, New York, New York.
Alfredo Vidal CeballosStructural Biology Initiative, Advanced Science Research Center, CUNY, New York, New York.
Patrizia CasacciaPh.D. Program in Biochemistry, Graduate Center of the City University of New York, New York, New York; Ph.D. Program in Biology, Graduate Center of the City University of New York, New York, New York; Neuroscience Initiative, Advanced Science Research Center, CUNY, New York, New York. Electronic address: pcasaccia@gc.cuny.edu.
Shana Elbaum-GarfinklePh.D. Program in Biochemistry, Graduate Center of the City University of New York, New York, New York; Ph.D. Program in Biology, Graduate Center of the City University of New York, New York, New York; Structural Biology Initiative, Advanced Science Research Center, CUNY, New York, New York; Ph.D. Program in Chemistry, Graduate Center of the City University of New York, New York. Electronic address: selbaumgarfinkle@gc.cuny.edu.
The Graduate Center, CUNY · US

Funding

Environmental Biosensors in the Oligodendrocyte LineageR35NS111604 · NINDS · ADVANCED SCIENCE RESEARCH CENTER · PI Patrizia Casaccia · 2019 to 2026
$9.1M
NINDS NIH HHS R35 NS111604
6 · The paper itself

Abstract

Biomolecular condensates have emerged as a powerful new paradigm in cell biology with broad implications to human health and disease, particularly in the nucleus where phase separation is thought to underly elements of chromatin organization and regulation. Specifically, it has been recently reported that phase separation of heterochromatin protein 1alpha (HP1α) with DNA contributes to the formation of condensed chromatin states. HP1α localization to heterochromatic regions is mediated by its binding to specific repressive marks on the tail of histone H3, such as trimethylated lysine 9 on histone H3 (H3K9me3). However, whether epigenetic marks play an active role in modulating the material properties of HP1α and dictating emergent functions of its condensates remains to be understood. Here, we leverage a reductionist system, composed of modified and unmodified histone H3 peptides, HP1α, and DNA, to examine the contribution of specific epigenetic marks to phase behavior of HP1α. We show that the presence of histone peptides bearing the repressive H3K9me3 is compatible with HP1α condensates, whereas peptides containing unmodified residues or bearing the transcriptional activation mark H3K4me3 are incompatible with HP1α phase separation. Using fluorescence microscopy and rheological approaches, we further demonstrate that H3K9me3 histone peptides modulate the dynamics and viscoelastic network properties of HP1α condensates in a concentration-dependent manner. Additionally, in cells exposed to uniaxial strain, we find there to be a decreased ratio of nuclear H3K9me3 to HP1α. These data suggest that HP1α-DNA condensates are viscoelastic materials, whose properties may provide an explanation for the dynamic behavior of heterochromatin in cells and in response to mechanostimulation.

Indexed as

Chromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneEpigenesis, GeneticHistonesBiomolecular CondensatesDNAHumansCBX5 protein, humanChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneDNAHistones

Identifiers

PMID38664966
PMCPMC11163287
OpenAlexW4395072005

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.