Evidence map›Paper›PMID 38664601›Full record

ArticleBMC bioinformatics2024

Orthogonal multimodality integration and clustering in single-cell data.

Yufang Liu, Yongkai Chen, Haoran Lu, Wenxuan Zhong, Guo-Cheng Yuan, Ping Ma

Abstract read
In one paragraph

Article in BMC bioinformatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yufang Liu *Department of Statistics, University of Georgia, Athens, GA, 30602, USA.
Yongkai Chen *Department of Statistics, University of Georgia, Athens, GA, 30602, USA.
Haoran LuDepartment of Statistics, University of Georgia, Athens, GA, 30602, USA.
Wenxuan ZhongDepartment of Statistics, University of Georgia, Athens, GA, 30602, USA.
Guo-Cheng YuanDepartment of Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA. guo-cheng.yuan@mssm.edu.
Ping MaDepartment of Statistics, University of Georgia, Athens, GA, 30602, USA. pingma@uga.edu.

Funding

Towards an integrated analytics solution to creating a spatially-resolved single-cell multi-omics brain atlasRF1MH133703 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ROUSSOS, PANAGIOTIS, YUAN, GUO-CHENG · 2023 to 2023
$2.6M
Collaborative Research: DMS/NIGMS 2: Novel machine-learning framework for AFMscanner in DNA-protein interaction detectionR01GM152814 · NIGMS · UNIVERSITY OF GEORGIA · PI Wenxuan Zhong · 2023 to 2026
$1.2M
NIGMS NIH HHS R01 GM152814NIH HHS R01GM152814NIH HHS RF1MH133703NIMH NIH HHS RF1 MH133703
6 · The paper itself

Abstract

Multimodal integration combines information from different sources or modalities to gain a more comprehensive understanding of a phenomenon. The challenges in multi-omics data analysis lie in the complexity, high dimensionality, and heterogeneity of the data, which demands sophisticated computational tools and visualization methods for proper interpretation and visualization of multi-omics data. In this paper, we propose a novel method, termed Orthogonal Multimodality Integration and Clustering (OMIC), for analyzing CITE-seq. Our approach enables researchers to integrate multiple sources of information while accounting for the dependence among them. We demonstrate the effectiveness of our approach using CITE-seq data sets for cell clustering. Our results show that our approach outperforms existing methods in terms of accuracy, computational efficiency, and interpretability. We conclude that our proposed OMIC method provides a powerful tool for multimodal data analysis that greatly improves the feasibility and reliability of integrated data.

Indexed as

Single-Cell AnalysisAlgorithmsCluster AnalysisComputational BiologyHumansCell clusteringCITE-seqMultimodality integration

Identifiers

PMID38664601
PMCPMC11045458

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.