Evidence map›Paper›PMID 38664566›Full record

ArticleNature structural & molecular biology2024

ISWI catalyzes nucleosome sliding in condensed nucleosome arrays.

Petra Vizjak, Dieter Kamp, Nicola Hepp, Alessandro Scacchetti, Mariano Gonzalez Pisfil, Joseph Bartho, Mario Halic, Peter B Becker, Michaela Smolle, Johannes Stigler and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Principles and mechanisms of plant acclimation to heat stress.Nature reviews. Molecular cell biology · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 8 institutions in 4 countries.

Petra VizjakInstitute of Physiological Chemistry, Faculty of Medicine Carl Gustav Carus, Technische Universität Dresden, Dresden, Germany.ORCID http://orcid.org/0009-0009-4528-6499
Dieter KampGene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Munich, Germany.ORCID http://orcid.org/0000-0002-5588-5358
Nicola HeppInstitute of Physiological Chemistry, Faculty of Medicine Carl Gustav Carus, Technische Universität Dresden, Dresden, Germany.
Alessandro ScacchettiDepartment of Molecular Biology, Biomedical Center, Faculty of Medicine, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany.ORCID http://orcid.org/0000-0002-0254-3717
Mariano Gonzalez PisfilCore Facility Bioimaging and Walter-Brendel-Centre of Experimental Medicine, Biomedical Center, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany.ORCID http://orcid.org/0000-0002-5008-8763
Joseph BarthoGene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Munich, Germany.
Mario HalicDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-0061-7372
Peter B BeckerDepartment of Molecular Biology, Biomedical Center, Faculty of Medicine, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany.ORCID http://orcid.org/0000-0001-7186-0372
Michaela SmolleDepartment of Physiological Chemistry, Biomedical Center, Faculty of Medicine, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany.ORCID http://orcid.org/0000-0001-8900-1541
Johannes Stigler *Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Munich, Germany. stigler@genzentrum.lmu.de.ORCID http://orcid.org/0000-0003-2472-5332
Felix Mueller-Planitz *Institute of Physiological Chemistry, Faculty of Medicine Carl Gustav Carus, Technische Universität Dresden, Dresden, Germany. felix.mueller-planitz@tu-dresden.de.ORCID http://orcid.org/0000-0001-8273-6473
Ludwig-Maximilians-Universität München · DEBoehringer Ingelheim (Germany) · DECentre of Experimental Medicine of the Slovak Academy of Sciences · SKCopenhagen University Hospital · DKEuropean Molecular Biology Laboratory · DESt. Jude Children's Research Hospital · USUniversity Hospital Carl Gustav Carus · DEUniversity of Pennsylvania · US

Funding

Structural and functional studies of chromatin modifiersR01GM135599 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI HALIC, MARIO · 2020 to 2023
$1.5M
Chromatin of repetitive elementsR01GM141694 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI HALIC, MARIO · 2021 to 2024
$1.4M
European Research Council 758124NIGMS NIH HHS R01 GM135599NIGMS NIH HHS R01 GM141694
6 · The paper itself

Abstract

How chromatin enzymes work in condensed chromatin and how they maintain diffusional mobility inside remains unexplored. Here we investigated these challenges using the Drosophila ISWI remodeling ATPase, which slides nucleosomes along DNA. Folding of chromatin fibers did not affect sliding in vitro. Catalytic rates were also comparable in- and outside of chromatin condensates. ISWI cross-links and thereby stiffens condensates, except when ATP hydrolysis is possible. Active hydrolysis is also required for ISWI's mobility in condensates. Energy from ATP hydrolysis therefore fuels ISWI's diffusion through chromatin and prevents ISWI from cross-linking chromatin. Molecular dynamics simulations of a 'monkey-bar' model in which ISWI grabs onto neighboring nucleosomes, then withdraws from one before rebinding another in an ATP hydrolysis-dependent manner, qualitatively agree with our data. We speculate that monkey-bar mechanisms could be shared with other chromatin factors and that changes in chromatin dynamics caused by mutations in remodelers could contribute to pathologies.

Indexed as

Adenosine TriphosphatasesMolecular Dynamics SimulationNucleosomesTranscription FactorsAdenosine TriphosphateAnimalsChromatinChromatin Assembly and DisassemblyDNADrosophilaDrosophila melanogasterDrosophila ProteinsHydrolysisAdenosine TriphosphatasesAdenosine TriphosphateChromatinDNADrosophila ProteinsISWI proteinNucleosomesTranscription Factors

Identifiers

PMID38664566
PMCPMC7618249
OpenAlexW4395453671

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.