Evidence map›Paper›PMID 38664376›Full record

ArticleNature communications2024

Numb positively regulates Hedgehog signaling at the ciliary pocket.

Xiaoliang Liu, Patricia T Yam, Sabrina Schlienger, Eva Cai, Jingyi Zhang, Wei-Ju Chen, Oscar Torres Gutierrez, Vanesa Jimenez Amilburu, Vasanth Ramamurthy, Alice Y Ting and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

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  17. Neuronal guidance behaviours: the primary cilium perspective.Frontiers in cell and developmental biology · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Xiaoliang Liu *Department of Molecular and Cell Biology, University of California, Merced, Merced, CA, 95340, USA.ORCID http://orcid.org/0009-0008-9296-9025
Patricia T Yam *Montreal Clinical Research Institute (IRCM), Montreal, QC, H2W 1R7, Canada.ORCID http://orcid.org/0000-0002-3631-3151
Sabrina SchliengerMontreal Clinical Research Institute (IRCM), Montreal, QC, H2W 1R7, Canada.
Eva CaiDepartment of Molecular and Cell Biology, University of California, Merced, Merced, CA, 95340, USA.ORCID http://orcid.org/0009-0006-0024-6969
Jingyi ZhangDepartment of Molecular and Cell Biology, University of California, Merced, Merced, CA, 95340, USA.ORCID http://orcid.org/0000-0001-6072-1123
Wei-Ju ChenMontreal Clinical Research Institute (IRCM), Montreal, QC, H2W 1R7, Canada.
Oscar Torres GutierrezDepartment of Molecular and Cell Biology, University of California, Merced, Merced, CA, 95340, USA.
Vanesa Jimenez AmilburuMontreal Clinical Research Institute (IRCM), Montreal, QC, H2W 1R7, Canada.
Vasanth RamamurthyMontreal Clinical Research Institute (IRCM), Montreal, QC, H2W 1R7, Canada.
Alice Y TingDepartments of Genetics, of Biology, and by courtesy, of Chemistry, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-8277-5226
Tess C BranonDepartments of Genetics, of Biology, and by courtesy, of Chemistry, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-6520-6419
Michel CayouetteMontreal Clinical Research Institute (IRCM), Montreal, QC, H2W 1R7, Canada.ORCID http://orcid.org/0000-0003-4655-9048
Risako GenDepartment of Biochemistry, University of Washington, Seattle, WA, 98195, USA.ORCID http://orcid.org/0009-0004-4416-0417
Tessa MarksDepartment of Biochemistry, University of Washington, Seattle, WA, 98195, USA.ORCID http://orcid.org/0009-0003-0853-8518
Jennifer H KongDepartment of Biochemistry, University of Washington, Seattle, WA, 98195, USA.ORCID http://orcid.org/0000-0002-4573-3270
Frédéric CharronMontreal Clinical Research Institute (IRCM), Montreal, QC, H2W 1R7, Canada. frederic.charron@ircm.qc.ca.ORCID http://orcid.org/0000-0003-3483-8672
Xuecai GeDepartment of Molecular and Cell Biology, University of California, Merced, Merced, CA, 95340, USA. xge2@ucmerced.edu.ORCID http://orcid.org/0000-0002-5896-0800
Montreal Clinical Research Institute · CAUniversity of California, Merced · USUniversity of Washington · USChan Zuckerberg Initiative (United States) · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
Regulation of the Hedgehog Pathway by new cilium proteins in Development and DiseaseR01GM143276 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI GE, XUECAI · 2022 to 2025
$1.5M
Molecular mechanisms that regulate target cell sensitivity to Hedgehog morphogensR00GM132518 · NIGMS · UNIVERSITY OF WASHINGTON · PI KONG, JENNIFER · 2023 to 2025
$871k
Target PDE4D to inhibit the Hedgehog pathwayR15CA235749 · NCI · UNIVERSITY OF CALIFORNIA, MERCED · PI GE, XUECAI · 2019 to 2022
$795k
Mechanistic study of Hedgehog signaling in the ciliumR21CA274595 · NCI · UNIVERSITY OF CALIFORNIA, MERCED · PI GE, XUECAI · 2022 to 2022
$385k
Molecular mechanisms that regulate target cell sensitivity to Hedgehog morphogensK99GM132518 · NIGMS · STANFORD UNIVERSITY · PI KONG, JENNIFER · 2019 to 2021
$281k
NCI NIH HHS P30 CA015704NCI NIH HHS R15 CA235749NCI NIH HHS R21 CA274595NIGMS NIH HHS K99 GM132518NIGMS NIH HHS R00 GM132518NIGMS NIH HHS R01 GM143276
6 · The paper itself

Abstract

Hedgehog (Hh) signaling relies on the primary cilium, a cell surface organelle that serves as a signaling hub for the cell. Using proximity labeling and quantitative proteomics, we identify Numb as a ciliary protein that positively regulates Hh signaling. Numb localizes to the ciliary pocket and acts as an endocytic adaptor to incorporate Ptch1 into clathrin-coated vesicles, thereby promoting Ptch1 exit from the cilium, a key step in Hh signaling activation. Numb loss impedes Sonic hedgehog (Shh)-induced Ptch1 exit from the cilium, resulting in reduced Hh signaling. Numb loss in spinal neural progenitors reduces Shh-induced differentiation into cell fates reliant on high Hh activity. Genetic ablation of Numb in the developing cerebellum impairs the proliferation of granule cell precursors, a Hh-dependent process, resulting in reduced cerebellar size. This study highlights Numb as a regulator of ciliary Ptch1 levels during Hh signal activation and demonstrates the key role of ciliary pocket-mediated endocytosis in cell signaling.

Indexed as

CerebellumCiliaHedgehog ProteinsNerve Tissue ProteinsPatched-1 ReceptorSignal TransductionAnimalsCell DifferentiationCell ProliferationEndocytosisHumansMembrane ProteinsMiceMice, KnockoutNeural Stem CellsHedgehog ProteinsMembrane ProteinsNerve Tissue ProteinsNumb protein, mousePatched-1 ReceptorPtch1 protein, mouseShh protein, mouse

Identifiers

PMID38664376
PMCPMC11045789
OpenAlexW4395463957

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.