Evidence map›Paper›PMID 38663984›Full record

ArticleJournal of medical genetics2024

Exome sequencing of 1190 non-syndromic clubfoot cases reveals

Wu-Lin Charng, Momchil Nikolov, Isabel Shrestha, Mark A Seeley, Navya Shilpa Josyula, Anne E Justice, Matthew B Dobbs, Christina A Gurnett

Open access · hybridAbstract read
In one paragraph

Article in Journal of medical genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Wu-Lin CharngDepartment of Neurology, Washington University in Saint Louis School of Medicine, Saint Louis, Missouri, USA.ORCID 0000-0003-0661-4081
Momchil NikolovDepartment of Neurology, Washington University in Saint Louis School of Medicine, Saint Louis, Missouri, USA.
Isabel ShresthaDepartment of Neurology, Washington University in Saint Louis School of Medicine, Saint Louis, Missouri, USA.
Mark A SeeleyDepartment of Orthopaedics, Geisinger Medical Center, Danville, Pennsylvania, USA.
Navya Shilpa JosyulaDepartment of Population Health Sciences, Geisinger, Danville, PA, USA.
Anne E JusticeDepartment of Population Health Sciences, Geisinger, Danville, PA, USA.
Matthew B DobbsPaley Orthopedic & Spine Institute, West Palm Beach, Florida, USA.
Christina A GurnettDepartment of Neurology, Washington University in Saint Louis School of Medicine, Saint Louis, Missouri, USA gurnettc@wustl.edu.
Washington University in St. Louis · USGeisinger Health System · USGeisinger Medical Center · US

Funding

WU INSTITUTE OF CLINICAL AND TRANSLATIONAL SCIENCESUL1TR002345 · NCATS · WASHINGTON UNIVERSITY · PI William G. Powderly · 2017 to 2026
$97.8M
WUIDDRC Supplement-Supporting the health and well-being of children with intellectual and developmental disability during COVID-19 pandemicP50HD103525 · NICHD · WASHINGTON UNIVERSITY · PI JOSEPH D DOUGHERTY, Natasha Marrus · 2020 to 2026
$15.5M
Non-coding/epigenetic regulationP01HD084387 · NICHD · UT SOUTHWESTERN MEDICAL CENTER · PI Nadav Ahituv, LILIANNA SOLNICAKREZEL · 2016 to 2026
$14.2M
Genetic Risk Factors for Severe ScoliosisR01AR067715 · NIAMS · WASHINGTON UNIVERSITY · PI DOBBS, MATTHEW BARRETT, GURNETT, CHRISTINA · 2015 to 2024
$6.0M
Training in the Genetics and Molecular Biology of Mental DisordersT32MH014677 · NIMH · WASHINGTON UNIVERSITY · PI RICE, JOHN P. · 1985 to 2020
$3.6M
NCATS NIH HHS UL1 TR002345NIAMS NIH HHS R01 AR067715NICHD NIH HHS P01 HD084387NICHD NIH HHS P50 HD103525NIMH NIH HHS T32 MH014677
6 · The paper itself

Abstract

backgroundClubfoot, presenting as a rigid inward and downward turning of the foot, is one of the most common congenital musculoskeletal anomalies. The aetiology of clubfoot is poorly understood and variants in known clubfoot disease genes account for only a small portion of the heritability.

methodsExome sequence data were generated from 1190 non-syndromic clubfoot cases and their family members from multiple ethnicities. Ultra-rare variant burden analysis was performed comparing 857 unrelated clubfoot cases with European ancestry with two independent ethnicity-matched control groups (1043 in-house and 56 885 gnomAD controls). Additional variants in prioritised genes were identified in a larger cohort, including probands with non-European ancestry. Segregation analysis was performed in multiplex families when available.

resultsRare variants in 29 genes were enriched in clubfoot cases, including

conclusionWe report

Indexed as

ClubfootExome SequencingHomeodomain ProteinsExomeFemaleGenetic Predisposition to DiseaseHumansMalePedigreeTranscription FactorsHomeodomain ProteinsHOXD12 protein, humanTranscription Factorsexome sequencinggenetic diseases, inborngenetic researchorthopedicssequence analysis, DNA

Identifiers

PMID38663984
PMCPMC11228210
OpenAlexW4395677512

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.