Evidence map›Paper›PMID 38662955›Full record

ArticleGenes, brain, and behavior2024

Differentially expressed genes of esophageal tissue in male acute and chronic sleep deprivation mice.

Jing Li, Yifan Lu, Dingding Yang, Mudan Ren, Yan Yin, Yan Zhao, Shuixiang He

Open access · hybridAbstract read
In one paragraph

Article in Genes, brain, and behavior, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jing LiDepartment of Gastroenterology, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Yifan LuDepartment of Neurobiology, School of Basic Medicine, Fourth Military Medical University, Xi'an, China.
Dingding YangDepartment of Neurobiology, School of Basic Medicine, Fourth Military Medical University, Xi'an, China.
Mudan RenDepartment of Gastroenterology, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Yan YinDepartment of Gastroenterology, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Yan ZhaoDepartment of Gastroenterology, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Shuixiang HeDepartment of Gastroenterology, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.ORCID 0000-0002-4832-1896
National Clinical Research Center for Digestive Diseases · CNAir Force Medical University · CN

Funding

Institutional Foundation of the First Affiliated Hospital of Xi'an Jiaotong University 2022YQPY03Natural Science Foundation of Shaanxi Province 2022JM-456Shaanxi Provincial International Scientific and Technological Cooperation Projects 2018KW-014
6 · The paper itself

Abstract

Gastroesophageal reflux disease (GERD) is associated with sleep disturbances. However, mechanisms underlying these interactions remain unclear. Male acute and chronic sleep deprivation (SD) mice were used for this study. Mice in the chronic SD group exhibited anxiety- and depression-like behaviors. We further performed high-throughput genome sequencing and bioinformatics analysis to screen for featured differentially expressed genes (DEGs) in the esophageal tissue. The acute SD group, comprised 25 DEGs including 14 downregulated and 11 upregulated genes. Compared with the acute SD group, more DEGs were present in the chronic SD group, with a total of 169 DEGs, including 88 downregulated and 81 upregulated genes. Some DEGs that were closely related to GERD and associated esophageal diseases were significantly different in the chronic SD group. Quantitative real-time polymerase chain reaction verified the downregulation of Krt4, Krt13, Krt15 and Calml3 and upregulation of Baxl1 and Per3. Notably, these DEGs are involved in biological processes, which might be the pathways of the neuroregulatory mechanisms of DEGs expression.

Indexed as

EsophagusSleep DeprivationAnimalsDepressionGastroesophageal RefluxMaleMiceMice, Inbred C57BLTranscriptomedifferentially expressed genesgastroesophageal reflux diseasenetwork analysisneuroregulatorysleep deprivation

Identifiers

PMID38662955
PMCPMC11045192
OpenAlexW4395446232

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.