Evidence map›Paper›PMID 38662774›Full record

ArticlePLoS pathogens2024

Identification of a viral gene essential for the genome replication of a domesticated endogenous virus in ichneumonid parasitoid wasps.

Ange Lorenzi, Fabrice Legeai, Véronique Jouan, Pierre-Alain Girard, Michael R Strand, Marc Ravallec, Magali Eychenne, Anthony Bretaudeau, Stéphanie Robin, Jeanne Rochefort and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Ange LorenziDGIMI, Univ Montpellier, INRAE, Montpellier, France.
Fabrice LegeaiINRAE, UMR Institut de Génétique, Environnement et Protection des Plantes (IGEPP), BioInformatics Platform for Agroecosystems Arthropods (BIPAA), Campus Beaulieu, Rennes, France.
Véronique JouanDGIMI, Univ Montpellier, INRAE, Montpellier, France.
Pierre-Alain GirardDGIMI, Univ Montpellier, INRAE, Montpellier, France.
Michael R StrandDepartment of Entomology, University of Georgia, Athens, Georgia, United States of America.
Marc RavallecDGIMI, Univ Montpellier, INRAE, Montpellier, France.
Magali EychenneDGIMI, Univ Montpellier, INRAE, Montpellier, France.
Anthony BretaudeauINRAE, UMR Institut de Génétique, Environnement et Protection des Plantes (IGEPP), BioInformatics Platform for Agroecosystems Arthropods (BIPAA), Campus Beaulieu, Rennes, France.
Stéphanie RobinINRAE, UMR Institut de Génétique, Environnement et Protection des Plantes (IGEPP), BioInformatics Platform for Agroecosystems Arthropods (BIPAA), Campus Beaulieu, Rennes, France.
Jeanne RochefortDGIMI, Univ Montpellier, INRAE, Montpellier, France.
Mathilde VillegasDGIMI, Univ Montpellier, INRAE, Montpellier, France.
Gaelen R BurkeDepartment of Entomology, University of Georgia, Athens, Georgia, United States of America.
Rita RebolloINRAE, INSA Lyon, BF2I, UMR203, Villeurbanne, France.
Nicolas NègreDGIMI, Univ Montpellier, INRAE, Montpellier, France.
Anne-Nathalie VolkoffDGIMI, Univ Montpellier, INRAE, Montpellier, France.ORCID 0000-0002-7211-1370
Université de Montpellier · FRInstitut national de recherche en sciences et technologies du numérique · FRUniversity of Georgia · USInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FR

Funding

Role of the Gut Microbiome in Mosquito DevelopmentR01AI106892 · NIAID · UNIVERSITY OF GEORGIA · PI STRAND, MICHAEL · 2014 to 2023
$3.6M
NIAID NIH HHS R01 AI106892
6 · The paper itself

Abstract

Thousands of endoparasitoid wasp species in the families Braconidae and Ichneumonidae harbor "domesticated endogenous viruses" (DEVs) in their genomes. This study focuses on ichneumonid DEVs, named ichnoviruses (IVs). Large quantities of DNA-containing IV virions are produced in ovary calyx cells during the pupal and adult stages of female wasps. Females parasitize host insects by injecting eggs and virions into the body cavity. After injection, virions rapidly infect host cells which is followed by expression of IV genes that promote the successful development of wasp offspring. IV genomes consist of two components: proviral segment loci that serve as templates for circular dsDNAs that are packaged into capsids, and genes from an ancestral virus that produce virions. In this study, we generated a chromosome-scale genome assembly for Hyposoter didymator that harbors H. didymator ichnovirus (HdIV). We identified a total of 67 HdIV loci that are amplified in calyx cells during the wasp pupal stage. We then focused on an HdIV gene, U16, which is transcribed in calyx cells during the initial stages of replication. Sequence analysis indicated that U16 contains a conserved domain in primases from select other viruses. Knockdown of U16 by RNA interference inhibited virion morphogenesis in calyx cells. Genome-wide analysis indicated U16 knockdown also inhibited amplification of HdIV loci in calyx cells. Altogether, our results identified several previously unknown HdIV loci, demonstrated that all HdIV loci are amplified in calyx cells during the pupal stage, and showed that U16 is required for amplification and virion morphogenesis.

Indexed as

Virus ReplicationWaspsAnimalsFemaleGenes, ViralGenome, ViralPolydnaviridaeViral ProteinsVirionViral Proteins

Identifiers

PMID38662774
PMCPMC11075835
OpenAlexW4395447710

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.