Evidence map›Paper›PMID 38661190›Full record

ArticleNucleic acids research2024

Pred-O3, a web server to predict molecules, olfactory receptors and odor relationships.

Guillaume Ollitrault, Rayane Achebouche, Antoine Dreux, Samuel Murail, Karine Audouze, Anne Tromelin, Olivier Taboureau

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Guillaume OllitraultInserm U1133, CNRS UMR 8251, Université Paris Cité, Paris, France.
Rayane AcheboucheInserm U1133, CNRS UMR 8251, Université Paris Cité, Paris, France.
Antoine DreuxInserm U1133, CNRS UMR 8251, Université Paris Cité, Paris, France.
Samuel MurailInserm U1133, CNRS UMR 8251, Université Paris Cité, Paris, France.
Karine AudouzeInserm UMR S-1124, Université Paris Cité, Paris, France.ORCID 0000-0001-7525-4089
Anne TromelinCentre des Sciences du Goût et de l'Alimentation, CNRS, INRAE, Institut Agro, Université de Bourgogne, F-21000 Dijon, France.
Olivier TaboureauInserm U1133, CNRS UMR 8251, Université Paris Cité, Paris, France.ORCID 0000-0001-7081-2491

Funding

Agence Nationale de la Recherche ANR-18-CE21-0006
6 · The paper itself

Abstract

The sense of smell is a biological process involving volatile molecules that interact with proteins called olfactory receptors to transmit a nervous message that allows the recognition of a perceived odor. However, the relationships between odorant molecules, olfactory receptors and odors (O3) are far from being well understood due to the combinatorial olfactory codes and large family of olfactory receptors. This is the reason why, based on 5802 odorant molecules and their annotations to 863 olfactory receptors (human) and 7029 odors and flavors annotations, a web server called Pred-O3 has been designed to provide insights into olfaction. Predictive models based on Artificial Intelligence have been developed allowing to suggest olfactory receptors and odors associated with a new molecule. In addition, based on the encoding of the odorant molecule's structure, physicochemical features related to odors and/or olfactory receptors are proposed. Finally, based on the structural models of the 98 olfactory receptors a systematic docking protocol can be applied and suggest if a molecule can bind or not to an olfactory receptor. Therefore, Pred-O3 is well suited to aid in the design of new odorant molecules and assist in fragrance research and sensory neuroscience. Pred-O3 is accessible at ' https://odor.rpbs.univ-paris-diderot.fr/'.

Indexed as

InternetOdorantsReceptors, OdorantSoftwareHumansMolecular Docking SimulationSmellReceptors, Odorant

Identifiers

PMID38661190
PMCPMC11223793

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.