Evidence map›Paper›PMID 38658973›Full record

ArticleClinical epigenetics2024

DNA methylation of imprint control regions associated with Alzheimer's disease in non-Hispanic Blacks and non-Hispanic Whites.

Sebnem E Cevik, David A Skaar, Dereje D Jima, Andy J Liu, Truls Østbye, Heather E Whitson, Randy L Jirtle, Cathrine Hoyo, Antonio Planchart

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Sebnem E CevikToxicology Program, North Carolina State University, Raleigh, NC, USA.
David A SkaarToxicology Program, North Carolina State University, Raleigh, NC, USA.
Dereje D JimaCenter for Human Health and the Environment, North Carolina State University, Raleigh, NC, USA.
Andy J LiuDepartment of Neurology, School of Medicine, Duke University, Durham, NC, USA.
Truls ØstbyeDepartment of Family Medicine and Community Health, Duke University, Durham, NC, USA.
Heather E WhitsonDepartment of Medicine, School of Medicine, Duke University, Durham, NC, USA.
Randy L JirtleToxicology Program, North Carolina State University, Raleigh, NC, USA. rljirtle@ncsu.edu.
Cathrine HoyoToxicology Program, North Carolina State University, Raleigh, NC, USA. choyo@ncsu.edu.
Antonio PlanchartToxicology Program, North Carolina State University, Raleigh, NC, USA.
North Carolina State University · USDuke University · US

Funding

Research Education Component CoreP30AG072958 · NIA · DUKE UNIVERSITY · PI Maria Marquine · 2021 to 2026
$24.1M
Translational Research Support CoreP30ES025128 · NIEHS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI Andrew R. Binder · 2015 to 2026
$18.3M
Social adversities, epigenetics, and the obesity epidemicR01MD011746 · NIMHD · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI HOYO, CATHRINE · 2017 to 2021
$4.4M
Prenatal stress and diet, and the fetal epigenomeR01MD017696 · NIMHD · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI Cathrine Hoyo · 2022 to 2026
$3.2M
Novel imprint control regions (ICRs) responsive to environmental exposuresR01ES032462 · NIEHS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI HOYO, CATHRINE · 2021 to 2025
$3.0M
Characterizing the Human Imprint Regulatory Regions Associated with Childhood ObesityR01HD098857 · NICHD · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI HOYO, CATHRINE, SKAAR, DAVID · 2019 to 2023
$3.0M
NIA NIH HHS P30 AG072958NICHD NIH HHS R01 HD098857NIEHS NIH HHS P30 ES025128NIEHS NIH HHS R01 ES032462NIH HHS R01HD098857NIH HHS R01MD017696NIMHD NIH HHS R01 MD011746NIMHD NIH HHS R01 MD017696
6 · The paper itself

Abstract

Alzheimer's disease (AD) prevalence is twice as high in non-Hispanic Blacks (NHBs) as in non-Hispanic Whites (NHWs). The objective of this study was to determine whether aberrant methylation at imprint control regions (ICRs) is associated with AD. Differentially methylated regions (DMRs) were bioinformatically identified from whole-genome bisulfite sequenced DNA derived from brain tissue of 9 AD (5 NHBs and 4 NHWs) and 8 controls (4 NHBs and 4 NHWs). We identified DMRs located within 120 regions defined as candidate ICRs in the human imprintome ( https://genome.ucsc.edu/s/imprintome/hg38.AD.Brain_track ). Eighty-one ICRs were differentially methylated in NHB-AD, and 27 ICRs were differentially methylated in NHW-AD, with two regions common to both populations that are proximal to the inflammasome gene, NLRP1, and a known imprinted gene, MEST/MESTIT1. These findings indicate that early developmental alterations in DNA methylation of regions regulating genomic imprinting may contribute to AD risk and that this epigenetic risk differs between NHBs and NHWs.

Indexed as

Alzheimer DiseaseDNA MethylationAgedAged, 80 and overBlack or African AmericanCase-Control StudiesEpigenesis, GeneticFemaleGenomic ImprintingHumansMaleNLR ProteinsWhiteNLR ProteinsAlzheimer’s diseaseComputational analysisDNA methylationEpigeneticsImprint control regions

Identifiers

PMID38658973
PMCPMC11043040
OpenAlexW4395457736

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.