ArticleNature genetics2024
Genomic variation in weedy and cultivated broomcorn millet accessions uncovers the genetic architecture of agronomic traits.
Article in Nature genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed, 13 citations in OpenAlex.
- Development of fragrant broomcorn millet (Panicum miliaceum L.) via CRISPR/Cas12i.3-mediated genome editing.Journal of integrative plant biology · 2026Article
- Graph-based pan-genome reveals structural variations associated with agronomic traits in mung bean.Nature genetics · 2026Article
- Genome-wide identification and expression analysis of the CCT gene family reveals its function in regulating heading date in proso millet (Frontiers in plant science · 2026Article
- Dissecting the genetic basis of agronomic traits by multi-trait GWAS and genetic networks in maize (aBIOTECH · 2025Article
- Text mining reveals the increasing importance of genomic approaches in crop research and breeding.Molecular breeding : new strategies in plant improvement · 2025Review
- Toward improving multiomic research in understudied cereals.Nature genetics · 2025Review
- Genomic insights into deleterious mutations and their impact on agronomic traits during pear domestication.Horticulture research · 2025Article
- Millets for a sustainable future.Journal of experimental botany · 2025Review
- Genetic dissection of a major locus SC9.1 conferring seed color in broomcorn millet (Panicum miliaceum).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- The pan-NLRome analysis based on 23 genomes reveals the diversity of NLRs inMolecular breeding : new strategies in plant improvement · 2024Article
- Comparative Transcriptomic Analysis Reveals Domestication and Improvement Patterns of Broomcorn Millet (International journal of molecular sciences · 2024Article
- New genes associated with adult-onset obesity.Nature reviews. Endocrinology · 2024Article
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Authors and funding
30 authors at 9 institutions in 1 country.
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Abstract
Large-scale genomic variations are fundamental resources for crop genetics and breeding. Here we sequenced 1,904 genomes of broomcorn millet to an average of 40× sequencing depth and constructed a comprehensive variation map of weedy and cultivated accessions. Being one of the oldest cultivated crops, broomcorn millet has extremely low nucleotide diversity and remarkably rapid decay of linkage disequilibrium. Genome-wide association studies identified 186 loci for 12 agronomic traits. Many causative candidate genes, such as PmGW8 for grain size and PmLG1 for panicle shape, showed strong selection signatures during domestication. Weedy accessions contained many beneficial variations for the grain traits that are largely lost in cultivated accessions. Weedy and cultivated broomcorn millet have adopted different loci controlling flowering time for regional adaptation in parallel. Our study uncovers the unique population genomic features of broomcorn millet and provides an agronomically important resource for cereal crops.
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