Evidence map›Paper›PMID 38658785›Full record

ArticleNPJ precision oncology2024

Overcoming limitations in current measures of drug response may enable AI-driven precision oncology.

Katja Ovchinnikova, Jannis Born, Panagiotis Chouvardas, Marianna Rapsomaniki, Marianna Kruithof-de Julio

Abstract read
In one paragraph

Article in NPJ precision oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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  15. Drug response in the era of precision medicine: A methodological review.Computational and structural biotechnology journal · 2025
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Katja OvchinnikovaUrology Research Laboratory, Department for BioMedical Research, University of Bern, Bern, Switzerland.
Jannis BornIBM Research Europe, Zurich, Switzerland.ORCID http://orcid.org/0000-0001-8307-5670
Panagiotis ChouvardasUrology Research Laboratory, Department for BioMedical Research, University of Bern, Bern, Switzerland.ORCID http://orcid.org/0000-0003-1527-3151
Marianna RapsomanikiIBM Research Europe, Zurich, Switzerland. marianna.rapsomaniki@unil.ch.ORCID http://orcid.org/0000-0003-3883-4871
Marianna Kruithof-de JulioUrology Research Laboratory, Department for BioMedical Research, University of Bern, Bern, Switzerland. marianna.kruithofdejulio@unibe.ch.ORCID http://orcid.org/0000-0002-6085-7706

Funding

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 202297
6 · The paper itself

Abstract

Machine learning (ML) models of drug sensitivity prediction are becoming increasingly popular in precision oncology. Here, we identify a fundamental limitation in standard measures of drug sensitivity that hinders the development of personalized prediction models - they focus on absolute effects but do not capture relative differences between cancer subtypes. Our work suggests that using z-scored drug response measures mitigates these limitations and leads to meaningful predictions, opening the door for sophisticated ML precision oncology models.

Identifiers

PMID38658785
PMCPMC11043358

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.