Evidence map›Paper›PMID 38658701›Full record

ReviewExperimental & molecular medicine2024

3C methods in cancer research: recent advances and future prospects.

Insoo Yoon, Uijin Kim, Kyung Oh Jung, Yousuk Song, Taesoo Park, Dong-Sung Lee

Erratum issuedOpen access · goldAbstract readReview
In one paragraph

Review in Experimental & molecular medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Insoo Yoon *Department of Life Science, University of Seoul, Seoul, 02504, Republic of Korea.
Uijin Kim *Department of Life Science, University of Seoul, Seoul, 02504, Republic of Korea.
Kyung Oh JungDepartment of Anatomy, College of Medicine, Chung-Ang University, Seoul, 06974, Republic of Korea.
Yousuk Song *Department of Life Science, University of Seoul, Seoul, 02504, Republic of Korea.
Taesoo Park *Department of Life Science, University of Seoul, Seoul, 02504, Republic of Korea.
Dong-Sung LeeDepartment of Life Science, University of Seoul, Seoul, 02504, Republic of Korea. dslee@uos.ac.kr.ORCID http://orcid.org/0000-0003-3815-7057
University of Seoul · KRChung-Ang University · KR

Funding

National Research Foundation of Korea (NRF) 2021R1C1C1006798National Research Foundation of Korea (NRF) 2022M3A9D3016848
6 · The paper itself

Abstract

In recent years, Hi-C technology has revolutionized cancer research by elucidating the mystery of three-dimensional chromatin organization and its role in gene regulation. This paper explored the impact of Hi-C advancements on cancer research by delving into high-resolution techniques, such as chromatin loops, structural variants, haplotype phasing, and extrachromosomal DNA (ecDNA). Distant regulatory elements interact with their target genes through chromatin loops. Structural variants contribute to the development and progression of cancer. Haplotype phasing is crucial for understanding allele-specific genomic rearrangements and somatic clonal evolution in cancer. The role of ecDNA in driving oncogene amplification and drug resistance in cancer cells has also been revealed. These innovations offer a deeper understanding of cancer biology and the potential for personalized therapies. Despite these advancements, challenges, such as the accurate mapping of repetitive sequences and precise identification of structural variants, persist. Integrating Hi-C with multiomics data is key to overcoming these challenges and comprehensively understanding complex cancer genomes. Thus, Hi-C is a powerful tool for guiding precision medicine in cancer research and treatment.

Indexed as

ChromatinNeoplasmsAnimalsGenomicsHumansPrecision MedicineChromatin

Identifiers

PMID38658701
PMCPMC11059347
OpenAlexW4395466013

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.