Evidence map›Paper›PMID 38658578›Full record

ArticleNature communications2024

CoCas9 is a compact nuclease from the human microbiome for efficient and precise genome editing.

Eleonora Pedrazzoli, Michele Demozzi, Elisabetta Visentin, Matteo Ciciani, Ilaria Bonuzzi, Laura Pezzè, Lorenzo Lucchetta, Giulia Maule, Simone Amistadi, Federica Esposito and 6 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Review
  3. Genome Editing Approaches in Flax (International journal of molecular sciences · 2026
    Review
  4. CRISPR-Cas9-mediated upregulation of utrophin ameliorates Duchenne muscular dystrophy.Molecular therapy : the journal of the American Society of Gene Therapy · 2026
    Article
  5. Wheat's Up with CRISPR-Cas-Current Advances, Obstacles and Perspectives.International journal of molecular sciences · 2026
    Review
  6. Article
  7. Review
  8. Review
  9. Peeling back the layers of immunogenicity in Cas9-based genomic medicine.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  10. Review
  11. Article
  12. Recent advances in therapeutic gene-editing technologies.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  13. Functional rescue of F508del-CFTR through revertant mutations introduced by CRISPR base editing.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Eleonora Pedrazzoli *Department of Computational, Cellular and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.ORCID http://orcid.org/0000-0002-8420-2587
Michele Demozzi *Department of Computational, Cellular and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.
Elisabetta Visentin *Department of Computational, Cellular and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.ORCID http://orcid.org/0000-0001-6586-4123
Matteo CicianiDepartment of Computational, Cellular and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.ORCID http://orcid.org/0000-0003-2045-5435
Ilaria BonuzziDepartment of Computational, Cellular and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.ORCID http://orcid.org/0000-0003-3179-474X
Laura PezzèAlia Therapeutics, Trento, Italy.ORCID http://orcid.org/0000-0001-8924-0083
Lorenzo LucchettaDepartment of Computational, Cellular and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.
Giulia MauleDepartment of Computational, Cellular and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.ORCID http://orcid.org/0000-0002-7770-5688
Simone AmistadiDepartment of Computational, Cellular and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy.ORCID http://orcid.org/0000-0002-1140-9165
Federica EspositoTelethon Institute of Genetics and Medicine (TIGEM), 80078, Pozzuoli (NA), Italy.ORCID http://orcid.org/0000-0002-8521-4627
Mariangela LupoTelethon Institute of Genetics and Medicine (TIGEM), 80078, Pozzuoli (NA), Italy.
Annarita MiccioUniversité de Paris, Imagine Institute, Laboratory of chromatin and gene regulation during development, INSERM, UMR 1163, Paris, France.ORCID http://orcid.org/0000-0002-3409-9665
Alberto AuricchioTelethon Institute of Genetics and Medicine (TIGEM), 80078, Pozzuoli (NA), Italy.ORCID http://orcid.org/0000-0002-0832-2472
Antonio CasiniAlia Therapeutics, Trento, Italy.ORCID http://orcid.org/0000-0001-7709-4955
Nicola SegataDepartment of Computational, Cellular and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy. nicola.segata@unitn.it.ORCID http://orcid.org/0000-0002-1583-5794
Anna CeresetoDepartment of Computational, Cellular and Integrative Biology (CIBIO), University of Trento, 38123, Trento, Italy. anna.cereseto@unitn.it.ORCID http://orcid.org/0000-0003-4453-2597

Funding

Exploiting Public Metagenomic Data to Uncover Cancer-Microbiome RelationshipsR01CA230551 · NCI · GRADUATE SCHOOL OF PUBLIC HEALTH AND HEALTH POLICY · PI Levi Waldron · 2020 to 2026
$3.9M
Exploiting public metagenomic data to uncover cancer-microbiome relationshipsU01CA230551 · NCI · GRADUATE SCHOOL OF PUBLIC HEALTH AND HEALTH POLICY · PI WALDRON, LEVI · 2019 to 2019
$464k
NCI NIH HHS R01 CA230551NCI NIH HHS U01 CA230551
6 · The paper itself

Abstract

The expansion of the CRISPR-Cas toolbox is highly needed to accelerate the development of therapies for genetic diseases. Here, through the interrogation of a massively expanded repository of metagenome-assembled genomes, mostly from human microbiomes, we uncover a large variety (n = 17,173) of type II CRISPR-Cas loci. Among these we identify CoCas9, a strongly active and high-fidelity nuclease with reduced molecular size (1004 amino acids) isolated from an uncultivated Collinsella species. CoCas9 is efficiently co-delivered with its sgRNA through adeno associated viral (AAV) vectors, obtaining efficient in vivo editing in the mouse retina. With this study we uncover a collection of previously uncharacterized Cas9 nucleases, including CoCas9, which enriches the genome editing toolbox.

Indexed as

CRISPR-Cas SystemsGene EditingMicrobiotaAnimalsCRISPR-Associated Protein 9DependovirusEubacterialesGenetic VectorsHEK293 CellsHumansMiceRetinaRNA, Guide, CRISPR-Cas SystemsCRISPR-Associated Protein 9RNA, Guide, CRISPR-Cas Systems

Identifiers

PMID38658578
PMCPMC11043407

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.