Evidence map›Paper›PMID 38658552›Full record

ArticleNature communications2024

High clonal diversity and spatial genetic admixture in early prostate cancer and surrounding normal tissue.

Ning Zhang, Luuk Harbers, Michele Simonetti, Constantin Diekmann, Quentin Verron, Enrico Berrino, Sara E Bellomo, Gabriel M C Longo, Michael Ratz, Niklas Schultz and 18 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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  9. A novel germlinePathologica · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 6 institutions in 5 countries.

Ning Zhang *Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, 17177, Sweden.
Luuk Harbers *Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, 17177, Sweden.ORCID http://orcid.org/0000-0003-3910-6497
Michele Simonetti *Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, 17177, Sweden.ORCID http://orcid.org/0000-0003-3322-1697
Constantin DiekmannDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, 17177, Sweden.ORCID http://orcid.org/0000-0002-4779-3541
Quentin VerronDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, 17177, Sweden.
Enrico BerrinoCandiolo Cancer Institute, FPO - IRCCS, Candiolo, SP142, km 3,95, 10060, Turin, Italy.ORCID http://orcid.org/0000-0001-6728-5619
Sara E BellomoCandiolo Cancer Institute, FPO - IRCCS, Candiolo, SP142, km 3,95, 10060, Turin, Italy.
Gabriel M C LongoInstitute of Molecular Biology (IMB), Mainz, 55128, Germany.ORCID http://orcid.org/0000-0003-2028-1068
Michael RatzDepartment of Cell and Molecular Biology, Karolinska Institute, Stockholm, 17177, Sweden.ORCID http://orcid.org/0000-0002-9795-8033
Niklas SchultzScience for Life Laboratory, Stockholm, 17177, Sweden.
Firas TarishSödersjukhuset, Stockholm, 11883, Sweden.
Peng SuDepartment of Pathology, Qilu Hospital of Shandong University, Ji'nan, 250012, China.
Bo HanDepartment of Pathology, Qilu Hospital of Shandong University, Ji'nan, 250012, China.
Wanzhong WangDepartment of Oncology and Pathology, Karolinska Institutet, Stockholm, 17177, Sweden.
Sofia OnoratoDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, 17177, Sweden.
Dora GrassiniDepartment of Medical Sciences, University of Turin, Turin, Italy.
Roberto BallarinoDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, 17177, Sweden.ORCID http://orcid.org/0000-0001-7812-0940
Silvia GiordanoCandiolo Cancer Institute, FPO - IRCCS, Candiolo, SP142, km 3,95, 10060, Turin, Italy.ORCID http://orcid.org/0000-0003-1854-1086
Qifeng YangDepartment of Breast Surgery, General Surgery, Qilu Hospital of Shandong University, Ji'nan, 250012, China.
Anna SapinoCandiolo Cancer Institute, FPO - IRCCS, Candiolo, SP142, km 3,95, 10060, Turin, Italy.ORCID http://orcid.org/0000-0003-3542-9571
Jonas FrisénDepartment of Cell and Molecular Biology, Karolinska Institute, Stockholm, 17177, Sweden.ORCID http://orcid.org/0000-0001-5819-458X
Kanar AlkassDepartment of Cell and Molecular Biology, Karolinska Institute, Stockholm, 17177, Sweden.
Henrik DruidDepartment of Oncology and Pathology, Karolinska Institutet, Stockholm, 17177, Sweden.ORCID http://orcid.org/0000-0002-9198-023X
Vassilis RoukosInstitute of Molecular Biology (IMB), Mainz, 55128, Germany.ORCID http://orcid.org/0000-0002-5065-3937
Thomas HelledayScience for Life Laboratory, Stockholm, 17177, Sweden.ORCID http://orcid.org/0000-0002-7384-092X
Caterina MarchiòCandiolo Cancer Institute, FPO - IRCCS, Candiolo, SP142, km 3,95, 10060, Turin, Italy.
Magda BienkoDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, 17177, Sweden.ORCID http://orcid.org/0000-0002-6499-9082
Nicola CrosettoDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, 17177, Sweden. nicola.crosetto@ki.se.ORCID http://orcid.org/0000-0002-3019-6978
Science for Life Laboratory · SEKarolinska Institutet · SECandiolo Cancer Institute · ITQilu Hospital of Shandong University · CNUniversity of Patras · GRUniversity of Turin · IT

Funding

Cancerfonden (Swedish Cancer Society) 19 0130 Pj 03 HCancerfonden (Swedish Cancer Society) CAN 2018/728Stiftelsen för Strategisk Forskning (Swedish Foundation for Strategic Research) BD15_0095
6 · The paper itself

Abstract

Somatic copy number alterations (SCNAs) are pervasive in advanced human cancers, but their prevalence and spatial distribution in early-stage, localized tumors and their surrounding normal tissues are poorly characterized. Here, we perform multi-region, single-cell DNA sequencing to characterize the SCNA landscape across tumor-rich and normal tissue in two male patients with localized prostate cancer. We identify two distinct karyotypes: 'pseudo-diploid' cells harboring few SCNAs and highly aneuploid cells. Pseudo-diploid cells form numerous small-sized subclones ranging from highly spatially localized to broadly spread subclones. In contrast, aneuploid cells do not form subclones and are detected throughout the prostate, including normal tissue regions. Highly localized pseudo-diploid subclones are confined within tumor-rich regions and carry deletions in multiple tumor-suppressor genes. Our study reveals that SCNAs are widespread in normal and tumor regions across the prostate in localized prostate cancer patients and suggests that a subset of pseudo-diploid cells drive tumorigenesis in the aging prostate.

Indexed as

DNA Copy Number VariationsProstatic NeoplasmsSingle-Cell AnalysisAgedAneuploidyClone CellsDiploidyHumansMaleProstate

Identifiers

PMID38658552
PMCPMC11043350
OpenAlexW4395118003

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.