Evidence map›Paper›PMID 38657970›Full record

ArticleAdvanced materials (Deerfield Beach, Fla.)2024

AMPLON: Amplifying DNA with Multiarm Priming and Looping Optimization of Nucleic Acid.

Mert Tunca Doganay, Ethan Roman, Andrea M Hujer, Robert A Bonomo, Steven G Deeks, Daniel R Kuritzkes, Mohamed S Draz

Abstract read
In one paragraph

Article in Advanced materials (Deerfield Beach, Fla.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mert Tunca DoganayDepartment of Medicine, Case Western Reserve University School of Medicine, Cleveland, OH, 44106, USA.
Ethan RomanDepartment of Medicine, Case Western Reserve University School of Medicine, Cleveland, OH, 44106, USA.
Andrea M HujerDepartment of Medicine, Case Western Reserve University School of Medicine, Cleveland, OH, 44106, USA.
Robert A BonomoDepartment of Medicine, Case Western Reserve University School of Medicine, Cleveland, OH, 44106, USA.
Steven G DeeksDepartment of Medicine, University of California, San Francisco, CA, 94110, USA.
Daniel R KuritzkesDepartment of Medicine, Harvard Medical School, Boston, MA, 02115, USA.
Mohamed S DrazDepartment of Medicine, Case Western Reserve University School of Medicine, Cleveland, OH, 44106, USA.ORCID 0009-0002-5433-384X

Funding

Unsolicited R24 for the CFAR-Network of Integrated Clinical Sciences, CNICSR24AI067039 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Michael S. Saag · 2006 to 2026
$99.4M
Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MALLORY O JOHNSON · 1988 to 2026
$93.6M
Delaney AIDS Research Enterprise to Cure HIVUM1AI164560 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS, Sharon Ruth Lewin · 2021 to 2026
$32.0M
Research Support Core D: Clinical and Behavioral ServicesP30DA054557 · NIDA · CASE WESTERN RESERVE UNIVERSITY · PI LEVINE, ALAN DAVID · 2021 to 2025
$16.2M
Pathology CoreU54CA254566 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI MADABHUSHI, ANANT · 2020 to 2024
$5.0M
Identification of immune protective pathways dysregulated by opioid use in HIV infection, using a systems biology-based approach, toward the goal of pharmacological restoration of immune functionR01DA043253 · NIDA · CASE WESTERN RESERVE UNIVERSITY · PI LEVINE, ALAN DAVID · 2016 to 2021
$4.3M
Delaney AIDS Research Enterprise (DARE UM1AI164560NCI NIH HHS U54 CA254566NIAID NIH HHS P30 AI027763NIAID NIH HHS R24 AI067039NIAID NIH HHS UM1 AI164560NIDA NIH HHS P30 DA054557NIDA NIH HHS R01 DA043253NIH HHS P30 DA054557NIH HHS U54CS254566SCOPE cohort was supported by the UCSF/Gladstone Institute of Virology & Immunology CFAR AI067039
6 · The paper itself

Abstract

Nucleic acid amplification, the bedrock of biotechnology and molecular diagnostics, surges in applications-especially isothermal approaches-heightening the demand for advanced and precisely engineered methods. Here, a novel approach for amplifying DNA with multiarm priming and looping optimization of nucleic acid (AMPLON) is presented. AMPLON relies on a novel polymeric material with unique set of multiarm polyethylene glycol-DNA primers for efficient DNA amplification under isothermal conditions. Each arm carries single-stranded DNA complementing the sense or antisense sequence of the target DNA. The amplification reaction begins with antisense arms binding to the target DNA, forming a template for sense-carrying arms to direct multiarm large DNA amplicon synthesis through successive DNA looping and unlooping steps. Using human immunodeficiency virus type 1 (HIV-1) as a model clinical target, AMPLON exhibits high sensitivity, detecting target concentrations as low as 100 copies mL

Indexed as

HIV-1Nucleic Acid Amplification TechniquesDNADNA PrimersHumansPolyethylene GlycolsRNA, ViralDNADNA PrimersPolyethylene GlycolsRNA, Viralbranched polyethylene glycolHIV‐1isothermal amplificationmultiarm primernucleic acid amplification

Identifiers

PMID38657970
PMCPMC11239297

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.