Evidence map›Paper›PMID 38657076›Full record

ArticleScience advances2024

tRNA anticodon cleavage by target-activated CRISPR-Cas13a effector.

Ishita Jain, Matvey Kolesnik, Konstantin Kuznedelov, Leonid Minakhin, Natalia Morozova, Anna Shiriaeva, Alexandr Kirillov, Sofia Medvedeva, Alexei Livenskyi, Laura Kazieva and 5 more

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Structure and mechanism of antiphage retron Eco2.Nature structural & molecular biology · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Specificity and mechanism of tRNA cleavage by the AriB Toprim nuclease of the PARIS bacterial immune system.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  15. Article
  16. Article
  17. A transcriptionally active lipid vesicle encloses the injectedbioRxiv : the preprint server for biology · 2024
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Ishita JainWaksman Institute for Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.ORCID 0000-0001-5024-1265
Matvey KolesnikCenter for Molecular and Cellular Biology, Skolkovo Institute of Science and Technology, Moscow, Russia.ORCID 0000-0002-7997-657X
Konstantin KuznedelovWaksman Institute for Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.ORCID 0000-0002-9040-3895
Leonid MinakhinWaksman Institute for Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.
Natalia MorozovaPeter the Great St. Petersburg Polytechnic University, Saint Petersburg, Russia.ORCID 0000-0002-3001-2593
Anna ShiriaevaPeter the Great St. Petersburg Polytechnic University, Saint Petersburg, Russia.ORCID 0000-0002-4271-1658
Alexandr KirillovPeter the Great St. Petersburg Polytechnic University, Saint Petersburg, Russia.
Sofia MedvedevaCenter for Molecular and Cellular Biology, Skolkovo Institute of Science and Technology, Moscow, Russia.
Alexei LivenskyiCenter for Precision Genome Editing and Genetic Technologies for Biomedicine, Institute of Gene Biology, Moscow, Russia.ORCID 0009-0001-2850-9904
Laura KazievaInstitute of Biomedical Chemistry, Moscow, Russia.ORCID 0000-0002-8636-9161
Kira S MakarovaNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health; Bethesda, MD, USA.ORCID 0000-0002-8174-2844
Eugene V KooninNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health; Bethesda, MD, USA.ORCID 0000-0003-3943-8299
Sergei BorukhovDepartment of Cell Biology and Neuroscience, Rowan University School of Osteopathic Medicine at Stratford; Stratford, NJ, USA.ORCID 0000-0002-3517-3003
Konstantin SeverinovWaksman Institute for Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.ORCID 0000-0001-9706-450X
Ekaterina SemenovaWaksman Institute for Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.ORCID 0000-0001-6816-8879

Funding

Finding Protein Sequence Motifs--Methods And ApplicationsZIALM000061 · NLM · NATIONAL LIBRARY OF MEDICINE · PI KOONIN, EUGENE V · 2009 to 2025
$10.6M
The Function of Small RNA-Based viral Defense System in E. coli - Renewal 1R01GM104071 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI SEMENOVA, EKATERINA · 2013 to 2024
$3.9M
An innovative hemoperfusion nanotrap for sepsis treatment.R01GM130941 · NIGMS · UPSTATE MEDICAL UNIVERSITY · PI LUO, JUNTAO · 2018 to 2021
$1.5M
NIGMS NIH HHS R01 GM104071NIGMS NIH HHS R01 GM130941
6 · The paper itself

Abstract

Type VI CRISPR-Cas systems are among the few CRISPR varieties that target exclusively RNA. The CRISPR RNA-guided, sequence-specific binding of target RNAs, such as phage transcripts, activates the type VI effector, Cas13. Once activated, Cas13 causes collateral RNA cleavage, which induces bacterial cell dormancy, thus protecting the host population from the phage spread. We show here that the principal form of collateral RNA degradation elicited by

Indexed as

AnticodonCRISPR-Cas SystemsEscherichia coliRNA, TransferBacteriophagesCRISPR-Associated ProteinsLeptotrichiaRNA CleavageAnticodonCRISPR-Associated ProteinsRNA, Transfer

Identifiers

PMID38657076
PMCPMC11042736

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.