Evidence map›Paper›PMID 38656516›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Coffee Cell Suspensions as a Platform for Transient Gene Expression Analysis.

Jimmy Villalta-Villalobos, Luiz Filipe Pereira, Andrés Gatica-Arias

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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Jimmy Villalta-VillalobosSchool of Biology, University of Costa Rica, San José, Costa Rica.
Luiz Filipe PereiraRural Development Institute of Parana (IAPAR-EMATER), Londrina, Paraná, Brazil.
Andrés Gatica-AriasSchool of Biology, University of Costa Rica, San José, Costa Rica. andres.gatica@ucr.ac.cr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Coffea arabica L. is a crucial crop globally, but its genetic homogeneity leads to its susceptibility to diseases and pests like the coffee berry borer (CBB). Chemical and cultural control methods are difficult due to the majority of the CBB life cycle taking place inside coffee beans. One potential solution is the use of the gene cyt1Aa from Bacillus thuringiensis as a biological insecticide. To validate candidate genes against CBB, a simple, rapid, and efficient transient expression system is necessary. This study uses cell suspensions as a platform for expressing the cyt1Aa gene in the coffee genome (C. arabica L. var. Catuaí) to control CBB. The Agrobacterium tumefaciens strain GV3101::pMP90 containing the bar and cyt1Aa genes are used to genetically transform embryogenic cell suspensions. PCR amplification of the cyt1Aa gene is observed 2, 5, and 7 weeks after infection. This chapter describes a protocol that can be used for the development of resistant varieties against biotic and abiotic stresses and CRISPR/Cas9-mediated genome editing.

Indexed as

Agrobacterium tumefaciensCoffeaBacillus thuringiensisBacillus thuringiensis ToxinsBacterial ProteinsCoffeeCRISPR-Cas SystemsEndotoxinsGene EditingGene Expression Regulation, PlantHemolysin ProteinsPlants, Genetically ModifiedTransformation, GeneticBacillus thuringiensis ToxinsBacterial ProteinsCoffeeEndotoxinsHemolysin Proteinsinsecticidal crystal protein, Bacillus ThuringiensisAgrobacterium tumefaciensBacillus thuringiensisCoffeecyt1Aa, barEmbryogenic cell suspension culturesGenetic transformation

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.