Evidence map›Paper›PMID 38656308›Full record

ArticleIUCrJ2024

Crystal structure of human peptidylarginine deiminase type VI (PAD6) provides insights into its inactivity.

Fanomezana M Ranaivoson, Rieke Bande, Isabell Cardaun, Antonio De Riso, Annette Gärtner, Pui Loke, Christina Reinisch, Prasuna Vogirala, Edward Beaumont

Open access · goldAbstract read
In one paragraph

Article in IUCrJ, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 9 citations in OpenAlex.

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  10. Structural insight into the function of human peptidyl arginine deiminase 6.Computational and structural biotechnology journal · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Fanomezana M RanaivosonProtein Sciences Department, Evotec (United Kingdom), 95 Park Drive, Abingdon OX14 4RY, United Kingdom.ORCID 0000-0001-5599-2682
Rieke BandeAssay Development Department, Manfred Eigen Campus, Evotec (Germany), Essener Bogen 7, 22419 Hamburg, Germany.
Isabell CardaunIn vitro Biology Department, Manfred Eigen Campus, Evotec SE, Essener Bogen 7, 22419 Hamburg, Germany.
Antonio De RisoProtein Sciences Department, Evotec (United Kingdom), 95 Park Drive, Abingdon OX14 4RY, United Kingdom.
Annette GärtnerIn vitro Biology Department, Manfred Eigen Campus, Evotec SE, Essener Bogen 7, 22419 Hamburg, Germany.
Pui LokeChemistry Department, Evotec (United Kingdom), 95 Park Drive, Abingdon OX14 4RY, United Kingdom.
Christina ReinischAssay Development Department, Manfred Eigen Campus, Evotec (Germany), Essener Bogen 7, 22419 Hamburg, Germany.
Prasuna VogiralaProtein Sciences Department, Evotec (United Kingdom), 95 Park Drive, Abingdon OX14 4RY, United Kingdom.
Edward BeaumontProtein Sciences Department, Evotec (United Kingdom), 95 Park Drive, Abingdon OX14 4RY, United Kingdom.ORCID 0000-0003-4813-1141
Evotec (United Kingdom) · GBEvotec (Germany) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human peptidylarginine deiminase isoform VI (PAD6), which is predominantly limited to cytoplasmic lattices in the mammalian oocytes in ovarian tissue, is essential for female fertility. It belongs to the peptidylarginine deiminase (PAD) enzyme family that catalyzes the conversion of arginine residues to citrulline in proteins. In contrast to other members of the family, recombinant PAD6 was previously found to be catalytically inactive. We sought to provide structural insight into the human homologue to shed light on this observation. We report here the first crystal structure of PAD6, determined at 1.7 Å resolution. PAD6 follows the same domain organization as other structurally known PAD isoenzymes. Further structural analysis and size-exclusion chromatography show that PAD6 behaves as a homodimer similar to PAD4. Differential scanning fluorimetry suggests that PAD6 does not coordinate Ca

Indexed as

Catalytic DomainProtein-Arginine Deiminase Type 6CalciumCrystallography, X-RayHumansHydrolasesModels, MolecularProtein-Arginine DeiminasesProtein ConformationCalciumHydrolasesPADI6 protein, humanProtein-Arginine DeiminasesProtein-Arginine Deiminase Type 6cytoplasmic latticeshuman peptidylarginine deiminase VImammalian fertilizationPAD6protein structures

Identifiers

PMID38656308
PMCPMC11067741
OpenAlexW4395463472

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.