Evidence map›Paper›PMID 38656290›Full record

ArticleeLife2024

Altered transcriptomic immune responses of maintenance hemodialysis patients to the COVID-19 mRNA vaccine.

Yi-Shin Chang, Kai Huang, Jessica M Lee, Christen L Vagts, Christian Ascoli, Md-Ruhul Amin, Mahmood Ghassemi, Claudia M Lora, Russell Edafetanure-Ibeh, Yue Huang and 15 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 1 institution in 1 country.

Yi-Shin Chang *Department of Medicine, University of Illinois at Chicago, Chicago, United States.ORCID https://orcid.org/0000-0002-9539-4553
Kai Huang *Department of Medicine, University of Illinois at Chicago, Chicago, United States.ORCID https://orcid.org/0000-0003-2445-2696
Jessica M LeeDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.ORCID https://orcid.org/0000-0002-4492-2221
Christen L VagtsDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Christian AscoliDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.ORCID https://orcid.org/0000-0002-7424-2710
Md-Ruhul AminDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Mahmood GhassemiDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Claudia M LoraDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Russell Edafetanure-IbehDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Yue HuangDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Ruth A CherianDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Nandini SarupDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Samantha R WarpechaDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Sunghyun HwangDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Rhea GoelDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Benjamin A TurturiceDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.ORCID https://orcid.org/0000-0001-9382-4612
Cody SchottDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Montserrat HernandezDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Yang ChenDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Julianne JorgensenDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Wangfei WangDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Mladen RasicDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Richard M NovakDepartment of Medicine, University of Illinois at Chicago, Chicago, United States.
Patricia W Finn *Department of Medicine, University of Illinois at Chicago, Chicago, United States.ORCID https://orcid.org/0000-0001-6936-103X
David L Perkins *Department of Medicine, University of Illinois at Chicago, Chicago, United States.
University of Illinois Chicago · US

Funding

Strengthening Stakeholder Engagement in Human Research Protections.UL1TR002003 · NCATS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KARNIK, NIRANJAN SUBHASH, MERMELSTEIN, ROBIN J. · 2016 to 2024
$33.7M
Precision Medicine in SarcoidosisR01HL138628 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI JACOBSON, JEFFREY R, PERKINS, DAVID LINN · 2018 to 2021
$3.6M
Postdoctoral Training Program in Pulmonary and Critical Care Translational ResearchT32HL144909 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI DUDEK, STEVEN M, FINN, PATRICIA W · 2019 to 2023
$1.3M
Immune Dysregulation in SarcoidosisF30HL151182 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI HUANG, KAI · 2020 to 2024
$260k
Influence of the perinatal microbiome on asthmatic phenotypes: associations with early life immune profilesF30HD102093 · NICHD · UNIVERSITY OF ILLINOIS AT CHICAGO · PI CHANG, YISHIN · 2020 to 2023
$197k
NCATS NIH HHS UL1 TR002003NHLBI NIH HHS F30 HL151182NHLBI NIH HHS F30HL151182NHLBI NIH HHS R01 HL138628NHLBI NIH HHS R01HL138628NHLBI NIH HHS T32 HL144909NHLBI NIH HHS T32HL144909NICHD NIH HHS F30 HD102093
6 · The paper itself

Abstract

Background: End-stage renal disease (ESRD) patients experience immune compromise characterized by complex alterations of both innate and adaptive immunity, and results in higher susceptibility to infection and lower response to vaccination. This immune compromise, coupled with greater risk of exposure to infectious disease at hemodialysis (HD) centers, underscores the need for examination of the immune response to the COVID-19 mRNA-based vaccines. Methods: The immune response to the COVID-19 BNT162b2 mRNA vaccine was assessed in 20 HD patients and cohort-matched controls. RNA sequencing of peripheral blood mononuclear cells was performed longitudinally before and after each vaccination dose for a total of six time points per subject. Anti-spike antibody levels were quantified prior to the first vaccination dose (V1D0) and 7 d after the second dose (V2D7) using anti-spike IgG titers and antibody neutralization assays. Anti-spike IgG titers were additionally quantified 6 mo after initial vaccination. Clinical history and lab values in HD patients were obtained to identify predictors of vaccination response. Results: Transcriptomic analyses demonstrated differing time courses of immune responses, with prolonged myeloid cell activity in HD at 1 wk after the first vaccination dose. HD also demonstrated decreased metabolic activity and decreased antigen presentation compared to controls after the second vaccination dose. Anti-spike IgG titers and neutralizing function were substantially elevated in both controls and HD at V2D7, with a small but significant reduction in titers in HD groups (p<0.05). Anti-spike IgG remained elevated above baseline at 6 mo in both subject groups. Anti-spike IgG titers at V2D7 were highly predictive of 6-month titer levels. Transcriptomic biomarkers after the second vaccination dose and clinical biomarkers including ferritin levels were found to be predictive of antibody development. Conclusions: Overall, we demonstrate differing time courses of immune responses to the BTN162b2 mRNA COVID-19 vaccination in maintenance HD subjects comparable to healthy controls and identify transcriptomic and clinical predictors of anti-spike IgG titers in HD. Analyzing vaccination as an in vivo perturbation, our results warrant further characterization of the immune dysregulation of ESRD. Funding: F30HD102093, F30HL151182, T32HL144909, R01HL138628. This research has been funded by the University of Illinois at Chicago Center for Clinical and Translational Science (CCTS) award UL1TR002003.

Indexed as

Antibodies, ViralBNT162 VaccineCOVID-19COVID-19 VaccinesKidney Failure, ChronicRenal DialysisSARS-CoV-2AgedAntibodies, NeutralizingFemaleHumansImmunoglobulin GMaleMiddle AgedmRNA VaccinesSpike Glycoprotein, CoronavirusAntibodies, NeutralizingAntibodies, ViralBNT162 VaccineCOVID-19 VaccinesImmunoglobulin GmRNA VaccinesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2binding antibodiesCOVID-19hemodialysishumaninfectious diseasemedicinemicrobiologyneutralizing antibodiesRNA sequencingvaccine

Identifiers

PMID38656290
PMCPMC11042800
OpenAlexW4395466314

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.