Evidence map›Paper›PMID 38656142›Full record

ArticleJournal of clinical microbiology2024

Construction of the ETECFinder database for the characterization of enterotoxigenic

Flemming Scheutz, Camilla Hald Nielsen, Astrid von Mentzer

Open access · hybridAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
6.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Investigation ofFoods (Basel, Switzerland) · 2025
    Article
  6. Shiga Toxin-ProducingMicroorganisms · 2025
    Article
  7. Genomic profiling of enterotoxigenicMicrobial genomics · 2025
    Article
  8. Clonal Diversity of Extraintestinal PathogenicAntibiotics (Basel, Switzerland) · 2025
    Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Flemming ScheutzThe International Escherichia and Klebsiella Centre, Statens Serum Institut, Copenhagen, Denmark.ORCID 0000-0002-3931-4846
Camilla Hald NielsenThe International Escherichia and Klebsiella Centre, Statens Serum Institut, Copenhagen, Denmark.
Astrid von MentzerDepartment of Microbiology and Immunology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
Statens Serum Institut · DKUniversity of Gothenburg · SE

Funding

European Union's Horizon 2020 research and innovation programme 773830Svenska Sällskapet för Medicinsk Forskning (SSMF) P18-0140Swedish Research Council 2022-01449
6 · The paper itself

Abstract

The identification of pathogens is essential for effective surveillance and outbreak detection, which lately has been facilitated by the decreasing cost of whole-genome sequencing (WGS). However, extracting relevant virulence genes from WGS data remains a challenge. In this study, we developed a web-based tool to predict virulence-associated genes in enterotoxigenic IMPORTANCE: Detecting colonization factors in enterotoxigenic

Indexed as

Enterotoxigenic Escherichia coliEscherichia coli InfectionsEscherichia coli ProteinsInternetVirulence FactorsAnimalsBacterial ToxinsComputational BiologyDatabases, GeneticEnterotoxinsGenome, BacterialHumansVirulenceWhole Genome SequencingBacterial ToxinsEnterotoxinsEscherichia coli ProteinsVirulence FactorsCGE websitecurated databaseenterotoxigenic E. coliETEC virulence genesWGS tool

Identifiers

PMID38656142
PMCPMC11237473
OpenAlexW4395082197

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.